PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g06600.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 475aa    MW: 50955.6 Da    PI: 8.406
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g06600.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-17317366255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Zjn_sc00022.1.g06600.1.am.mk 317 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 366
                                   69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-21317375IPR016177DNA-binding domain
SMARTSM003803.3E-37317380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-32317375IPR001471AP2/ERF domain
PROSITE profilePS5103222.958317374IPR001471AP2/ERF domain
PfamPF008479.0E-12317366IPR001471AP2/ERF domain
CDDcd000181.58E-28318376No hitNo description
PRINTSPR003674.4E-10318329IPR001471AP2/ERF domain
PRINTSPR003674.4E-10340356IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEDKVRWGGE GRKKVQFGAA VECTTESGVP VVARPAKIAR DRPSLADRQH MRVRSTTILT  60
CDREIESDGV DLRYISPEAW RLRRTTTCTA NEQSVERKLN ELHATIDCYD PNKSNPTERA  120
SELAGSSAYS KRRYETRGRV GRAESEARAK GHGRHHGGVE TNTHGAGASS WHAWPFGPSR  180
TTRLRRRSSV RSNPAGLPAA LHWGRGPCSS IAPVDLRETV DGDPCRKSPT APLVSSAHCH  240
TPPSSALLLT NSTTNTNTSS AAMAMDDPSS GSETTTSSSA EAPASPTATA TSASSSDAAA  300
EGVGKKKRRR SDGHHPTYRG VRMRAWGKWV SEIREPRKKS RIWLGTFATA EMAARAHDVA  360
ALAIKGRAAH LNFPELASEL PRPATAAPKD VQAAAALAAA ADFLVPAANA GAKDAEEPEA  420
SPASASPPQD NAEDALFDLP DLLFDLRYGP PSCAASWEDD GAGVFRLEEP LLWEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16297374272Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304309KKKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282621e-110KJ728262.1 Zea mays clone pUT6539 AP2-EREBP transcription factor (EREB176) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-38ERF family protein