PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g07470.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family YABBY
Protein Properties Length: 259aa    MW: 27370.3 Da    PI: 7.7827
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g07470.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY219.88.1e-68192155170
                         YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshldeslkee............ 70 
                                   s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhCt+llsvnl+       + +a ++l+  ++ +            
  Zjn_sc00022.1.g07470.1.sm.mk  19 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCTNLLSVNLRGLLlppAAPPAANQLNFGVQSSllsptsphglld 99 
                                   578********************************************99867677888898888777778889999***** PP

                         YABBY  71 .........lleelkveeenlksnvekeesastsvssekl.....senedeevp..rvppvirPPekrqrvPsaynrfike 135
                                            l+e+   + ++++ n  ++++as+  ++++      + +++ e+p   vp v+rPPekrqrvPsaynrfik+
  Zjn_sc00022.1.g07470.1.sm.mk 100 elalqapslLMEQASANLSSITGNSYSSSCASNVPAMSMQpaaakPVQHEPELPakSVPSVNRPPEKRQRVPSAYNRFIKD 180
                                   *99999987777777777777777777777777666655477766455555554214677********************* PP

                         YABBY 136 eiqrikasnPdishreafsaaaknWahfPkihfgl 170
                                   eiqrika+nPdi+hreafsaaaknWahfP+ihfgl
  Zjn_sc00022.1.g07470.1.sm.mk 181 EIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 215
                                   *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.9E-7020215IPR006780YABBY protein
SuperFamilySSF470959.03E-8155208IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.5E-4164207IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSSSSSSTAA FPLDHLAPSP TEQLCYVHCN CCDTILAVGV PCSSLFKTVT VRCGHCTNLL  60
SVNLRGLLLP PAAPPAANQL NFGVQSSLLS PTSPHGLLDE LALQAPSLLM EQASANLSSI  120
TGNSYSSSCA SNVPAMSMQP AAAKPVQHEP ELPAKSVPSV NRPPEKRQRV PSAYNRFIKD  180
EIQRIKAGNP DITHREAFSA AAKNWAHFPH IHFGLMPDQG LKKTFKTQDG AEDMLLKDGL  240
YAAAAAAAAA AVNMGVTPF
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452852.11e-142protein YABBY 4
SwissprotA2X7Q31e-131YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-131YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A3L6QIB71e-142A0A3L6QIB7_PANMI; Uncharacterized protein
STRINGSb04g033590.11e-141(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.17e-64YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]