PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g00440.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 307aa    MW: 32593.2 Da    PI: 5.7519
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g00440.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.5e-36111022102
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+y ++ed++++++isw+++g++fvv+ ++efa+++Lpk+Fkhsnf+SFvRQLn+YgFkkv  ++         we
  Zjn_sc00023.1.g00440.1.sm.mkhc  11 FLTKTYAMVEDPSTDDTISWNDRGKAFVVWRPDEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADR---------WE 80 
                                     9****************************************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkks 102
                                     F+h+ F++g+k+ll  i+r+k 
  Zjn_sc00023.1.g00440.1.sm.mkhc  81 FAHDCFRRGEKHLLGGIQRRKG 102
                                     *******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.16E-367100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.9E-567100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.7E-397100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3211100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-191134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-194961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MASPAAGTPP FLTKTYAMVE DPSTDDTISW NDRGKAFVVW RPDEFARDLL PKHFKHSNFS  60
SFVRQLNTYG FKKVVADRWE FAHDCFRRGE KHLLGGIQRR KGTGAGAGAA AGPGIPTAIP  120
ISSPPTSSGG ETAVSSSPPR GVAAAPGSAA GVSGXXAELE EENARLRREN ARLTRELARA  180
RRLCDGVQRL MSRYDHGGEG EDEAGSDGGR GGGAGPGGKP MLFGVAIGSK RHRGNEEEEE  240
EEDDGAEDNG EEEDDDDERP VVRARESKKR NDQSDLDVLA LSVRAAAAAR PGSGAAAGSR  300
DRKSSVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-27110011120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444830.0AY344483.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976526.11e-125heat stress transcription factor B-2a-like
SwissprotQ7XRX31e-118HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBLA0A368RZJ31e-124A0A368RZJ3_SETIT; Uncharacterized protein
STRINGSb06g025710.11e-124(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.17e-47HSF family protein
Publications ? help Back to Top
  1. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]