PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00023.1.g01130.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 580aa MW: 61944.2 Da PI: 6.4322

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00023.1.g01130.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	96.3	2e-30	273	371	1	93
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+kv tpsdv+k++rlv+pk++ae++ + +e++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++g Zjn_sc00023.1.g01130.1.am.mk 273 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAG 353 89*************************955556889*************************************** PP -EEEEEE-.SS.SEE..E CS B3 78 DfvvFkld.gr.sefelv 93 D+++F++ g+ + +l+ Zjn_sc00023.1.g01130.1.am.mk 354 DTITFSRGaGEaARDRLF 371 ****653444555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.3E-41	263	384	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.28E-29	270	361	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.61E-26	271	360	No hit	No description
Pfam	PF02362	7.2E-28	273	376	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-22	273	378	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.24	273	378	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence Send to blast
MTRTSSHEPN QLIHSGPHPS PAILQSYSYT YAAVQRCDPA VTFQESSRAV PPSLTSPRRE 60 KELVTTRCVS LPINLISLLA AASSDAHGQC EARRADEALR IPASRSAVST SSDLKLAEPN 120 SLAYQHLLLV EVIPRLLFTL STQQASEQPN HRPAVRALAG PSHRIDAAAE PHAPLKGGEG 180 IEEEAKGCAA FSKEEDEEEE QEHEEEDDDE ASPREIPFMT AAAVSTAAAS SSSPSASASA 240 SALRSSDGAG ASGSGGGGGG SDDVEVIEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP 300 LDSAANEKGL LLSFEDRAGK LWRFRYSYWN SSQSYVMTKG WSRFVKEKRL DAGDTITFSR 360 GAGEAARDRL FIDWKRRADV SDPHSLPRIP LPMPPAASPY GPWGGGAGGF FMPPAPPATL 420 YEHHRLRQSL DFRNVNAAAP ARQLLFFGSA GMPPPGPMLP PPPPVHITVQ PSPAVTAGLP 480 MVLESVPLVN SPTAASKRLR LFGVNLDNPH PGGGESSHDA NALSLRMPGW QRPSPLRLFE 540 SPHHQPNVAG AAGVESSAAS SPSSSSSSKR EAHSSLDLDL

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence Send to blast

MTRTSSHEPN QLIHSGPHPS PAILQSYSYT YAAVQRCDPA VTFQESSRAV PPSLTSPRRE  60
KELVTTRCVS LPINLISLLA AASSDAHGQC EARRADEALR IPASRSAVST SSDLKLAEPN  120
SLAYQHLLLV EVIPRLLFTL STQQASEQPN HRPAVRALAG PSHRIDAAAE PHAPLKGGEG  180
IEEEAKGCAA FSKEEDEEEE QEHEEEDDDE ASPREIPFMT AAAVSTAAAS SSSPSASASA  240
SALRSSDGAG ASGSGGGGGG SDDVEVIEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP  300
LDSAANEKGL LLSFEDRAGK LWRFRYSYWN SSQSYVMTKG WSRFVKEKRL DAGDTITFSR  360
GAGEAARDRL FIDWKRRADV SDPHSLPRIP LPMPPAASPY GPWGGGAGGF FMPPAPPATL  420
YEHHRLRQSL DFRNVNAAAP ARQLLFFGSA GMPPPGPMLP PPPPVHITVQ PSPAVTAGLP  480
MVLESVPLVN SPTAASKRLR LFGVNLDNPH PGGGESSHDA NALSLRMPGW QRPSPLRLFE  540
SPHHQPNVAG AAGVESSAAS SPSSSSSSKR EAHSSLDLDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	6e-61	268	380	3	116	B3 domain-containing transcription factor NGA1
5os9_B	6e-61	268	380	3	116	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727694	0.0	KJ727694.1 Zea mays clone pUT5633 ABI3VP1 transcription factor (ABI12) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976592.1	1e-167	B3 domain-containing protein Os02g0683500
Swissprot	Q6EU30	1e-129	Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBL	A0A1E5V6G8	1e-175	A0A1E5V6G8_9POAL; B3 domain-containing protein
STRING	Si011823m	1e-167	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	5e-66	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]