PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00023.1.g05690.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 376aa MW: 40735.4 Da PI: 6.3457

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00023.1.g05690.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.9e-07	328	351	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++C +f C+ G++C+F H+ Zjn_sc00023.1.g05690.1.am.mkhc 328 TKPCAYFNTARGCRNGANCTFLHD 351 89*********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.235	325	353	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.6E-6	328	351	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-4	328	351	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-5	330	355	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MCQVRLFLSD DSPSQAGLRP QDNLQAKGSW LVHAAGPSSD DSLPPGFESL QPTNNVKIDI 60 SKVPLIRWRC PPKMLLNPGW HIVAGEESVE SATQNERIFG ALEAMYPRQS NIPPNPFVSP 120 DLIDSHYDDS RTQSVPLIPI EEDDASDQLE EPPVHLPNNC HRSDKYESAV ISVPPVSDAS 180 TTTATEHQPS GLIGSASAGI PAEPDVLAAA SAAYTAVMES TQMGNPMVTY QNLNPTLRSP 240 PVLNRLPQAV ASVSMNPPAS SSQGLNFSRG INYYKTLIQQ HGGERQEPLE HHGTQFGMYQ 300 QSNPTQASNV DVARSGAVQS QYTKARPTKP CAYFNTARGC RNGANCTFLH DGSAARKEQP 360 KGAKRLKLDS RIAGQY

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MCQVRLFLSD DSPSQAGLRP QDNLQAKGSW LVHAAGPSSD DSLPPGFESL QPTNNVKIDI  60
SKVPLIRWRC PPKMLLNPGW HIVAGEESVE SATQNERIFG ALEAMYPRQS NIPPNPFVSP  120
DLIDSHYDDS RTQSVPLIPI EEDDASDQLE EPPVHLPNNC HRSDKYESAV ISVPPVSDAS  180
TTTATEHQPS GLIGSASAGI PAEPDVLAAA SAAYTAVMES TQMGNPMVTY QNLNPTLRSP  240
PVLNRLPQAV ASVSMNPPAS SSQGLNFSRG INYYKTLIQQ HGGERQEPLE HHGTQFGMYQ  300
QSNPTQASNV DVARSGAVQS QYTKARPTKP CAYFNTARGC RNGANCTFLH DGSAARKEQP  360
KGAKRLKLDS RIAGQY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960188.1	0.0	zinc finger CCCH domain-containing protein 30
Swissprot	Q7XM16	2e-85	C3H30_ORYSJ; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A0A9CYC0	0.0	A0A0A9CYC0_ARUDO; Uncharacterized protein
STRING	Si024685m	1e-179	(Setaria italica)
STRING	Sb06g031850.1	1e-179	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8680	10	13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]