PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g06830.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YC
Protein Properties Length: 127aa    MW: 13715.5 Da    PI: 4.9777
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g06830.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC102.43.2e-322211019100
                         NF-YC  19 helPlarikkilk.......adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                                   h+lPlarikki+k       ad   +mis eaPv++skacelfi elt r+w  + e krrt++k d+a+av +td fdfl
  Zjn_sc00023.1.g06830.1.sm.mk  22 HALPLARIKKIMKrsageatADGGARMISGEAPVVFSKACELFIAELTRRAWAATLEGKRRTVHKEDVAEAVRNTDLFDFL 102
                                   89**********9555544447789******************************************************** PP

                         NF-YC  93 vdivprde 100
                                   vd v  de
  Zjn_sc00023.1.g06830.1.sm.mk 103 VDLVTADE 110
                                   ****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.01E-2518102IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.6E-321994IPR009072Histone-fold
PfamPF008084.1E-172493IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MRQARPYSGI FCGGVSARTG PHALPLARIK KIMKRSAGEA TADGGARMIS GEAPVVFSKA  60
CELFIAELTR RAWAATLEGK RRTVHKEDVA EAVRNTDLFD FLVDLVTADE SDNAPAAGYD  120
DDDEAME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-31221061693NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9582361e-113EU958236.1 Zea mays clone 1680099 nuclear transcription factor Y subunit C-9 mRNA, complete cds.
GenBankHQ2345021e-113HQ234502.1 Zea mays clone BAC ZMMBBb0342E21 DNA-binding protein, peroxisomal-CoA synthetase, cleavage and polyadenylation specificity factor 5, DNA mismatch repair protein, and putative potassium efflux system protein family genes, complete cds; and unknown gene.
GenBankKJ7270091e-113KJ727009.1 Zea mays clone pUT3990 CCAAT-HAP5 transcription factor (CA5P1) gene, partial cds.
GenBankKJ7270101e-113KJ727010.1 Zea mays clone pUT3991 CCAAT-HAP5 transcription factor (CA5P2) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825631.17e-70nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG73e-31NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A2S3IBP52e-68A0A2S3IBP5_9POAL; Uncharacterized protein
TrEMBLA0A2T7D1W52e-68A0A2T7D1W5_9POAL; Uncharacterized protein
TrEMBLA0A3L6PUG02e-68A0A3L6PUG0_PANMI; Nuclear transcription factor Y subunit C-2-like
STRINGPavir.Ga00522.1.p7e-69(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116583339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-33nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]