PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00024.1.g01660.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 260aa    MW: 27231.7 Da    PI: 9.587
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00024.1.g01660.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.7e-39521511100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +CaaCk+lrr+Ca++C+++ yf   +p+kfa+vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il
  Zjn_sc00024.1.g01660.1.sm.mk  52 PCAACKLLRRRCAQECPFSLYFSPLEPHKFAAVHKVFGASNVSKMLLEVHESQRADAANSLVYEANLRLRDPVYGCMGAIL 132
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkee 100
                                   +lqqq++ l+aela++++e
  Zjn_sc00024.1.g01660.1.sm.mk 133 TLQQQVQALEAELAAVRAE 151
                                   ***************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.82151152IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3952149IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSTASHWQDH EVGRKIKKES AAAAADRMTA AAAAGAGSAG AGPGSALNTI TPCAACKLLR  60
RRCAQECPFS LYFSPLEPHK FAAVHKVFGA SNVSKMLLEV HESQRADAAN SLVYEANLRL  120
RDPVYGCMGA ILTLQQQVQA LEAELAAVRA EIVRRRYRPA AAASAAGVAT VLPSSHASQL  180
LAASAAGRGL PAASARSAAT RTATLAASSS SSSTVYAAAS NSTDYSSITN ENEFLFITQK  240
QRQAPTLGDK NTKGEYYLQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-395217311127LOB family transfactor Ramosa2.1
5ly0_B1e-395217311127LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958311e-134FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167556.11e-112LOB domain-containing protein 15-like
SwissprotQ9AT611e-67LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A3B5ZSF71e-110A0A3B5ZSF7_WHEAT; Uncharacterized protein
TrEMBLA0A452Y3X41e-110A0A452Y3X4_AEGTS; Uncharacterized protein
STRINGTraes_1AS_43FB6A3CF.11e-111(Triticum aestivum)
STRINGTraes_1DS_BB8508CC6.11e-111(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26303891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.14e-54LOB domain-containing protein 15
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]