PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00024.1.g02580.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 87aa MW: 9333.24 Da PI: 6.0586

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00024.1.g02580.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	47.9	2.7e-15	10	46	23	59
EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +YYrC+ gC vkk+ver+ ed+++v++tY g Hnh Zjn_sc00024.1.g02580.1.sm.mk 10 NYYRCSADGCGVKKRVERDCEDTRYVITTYDGVHNHA 46 7***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00774	2.9E-8	4	47	IPR003657	WRKY domain
Pfam	PF03106	9.5E-11	10	45	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-12	10	46	IPR003657	WRKY domain
PROSITE profile	PS50811	15.571	10	48	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.4E-13	10	46	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MEILDDGFMN YYRCSADGCG VKKRVERDCE DTRYVITTYD GVHNHASSAA TAIMQYGGGT 60 GAHGFYSPPH NGSPPAATSY SSGSLLF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU058609	3e-43	KU058609.1 UNVERIFIED: Panicum miliaceum WRKY15-like gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001309782.1	7e-33	uncharacterized protein LOC107546771
Refseq	XP_020394763.1	7e-33	uncharacterized protein LOC107546771 isoform X2
Swissprot	Q93WU9	7e-15	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	B6T4Y9	1e-31	B6T4Y9_MAIZE; WRKY67-superfamily of TFs having WRKY and zinc finger domains
STRING	GRMZM2G163054_P04	3e-32	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP44308	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	3e-17	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]