PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00024.1.g02770.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 372aa MW: 41748.5 Da PI: 7.8943

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00024.1.g02770.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.2	8.1e-33	50	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatg 71 +p+G++F+P+d+el+ ++L+ v++ ++++ i+ +i++++P++Lp v+++ + +fF++ +k+y++g Zjn_sc00024.1.g02770.1.am.mkhc 50 MPAGVKFDPSDQELI-HHLRTMVDDGGsrahplIDEFIPtIQGDdGICYTHPENLP-GVRKDGLSKHFFHRPSKAYTNG 126 699**********.99*99986665443332333665546******.666677799********* PP NAM 72 krknra............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +rk+r+ +++ +W++tgk++++++ +g++ g+kk+Lv+y g+++k+ekt+Wvmh+y+l Zjn_sc00024.1.g02770.1.am.mkhc 127 TRKRRKiharrdlnssdnAAEMRWHKTGKTRPLIV-EGRQEGCKKILVLYanFGKRRKPEKTNWVMHQYHL 196 *879999999988877899********.9999******6547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-34	43	214	IPR003441	NAC domain
PROSITE profile	PS51005	30.993	50	214	IPR003441	NAC domain
Pfam	PF02365	2.0E-14	51	196	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MNRELPIPTI SSSCGLEITA GKFEHRRVST LRSCPSCGHA IDCNTDMVGM PAGVKFDPSD 60 QELIHHLRTM VDDGGSRAHP LIDEFIPTIQ GDDGICYTHP ENLPGVRKDG LSKHFFHRPS 120 KAYTNGTRKR RKIHARRDLN SSDNAAEMRW HKTGKTRPLI VEGRQEGCKK ILVLYANFGK 180 RRKPEKTNWV MHQYHLGDQE EKDGELVVSK VFYQTQTRQH VATAAPAMVA TAEQDSMKGE 240 EAAETSEETQ DELSGCAAAS TTSMVVMMQQ RQQRRTNRDD GQLRVADSRK RDHEVGLGDQ 300 ETSHKQEQND NRNIASQQQV RSYLDATPAI SFIASTPWKK SSTVASPADG ASTKSETERV 360 YWPPDRNQEQ HG

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MNRELPIPTI SSSCGLEITA GKFEHRRVST LRSCPSCGHA IDCNTDMVGM PAGVKFDPSD  60
QELIHHLRTM VDDGGSRAHP LIDEFIPTIQ GDDGICYTHP ENLPGVRKDG LSKHFFHRPS  120
KAYTNGTRKR RKIHARRDLN SSDNAAEMRW HKTGKTRPLI VEGRQEGCKK ILVLYANFGK  180
RRKPEKTNWV MHQYHLGDQE EKDGELVVSK VFYQTQTRQH VATAAPAMVA TAEQDSMKGE  240
EAAETSEETQ DELSGCAAAS TTSMVVMMQQ RQQRRTNRDD GQLRVADSRK RDHEVGLGDQ  300
ETSHKQEQND NRNIASQQQV RSYLDATPAI SFIASTPWKK SSTVASPADG ASTKSETERV  360
YWPPDRNQEQ HG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808650.1	1e-130	NAC domain-containing protein 10-like isoform X2
Swissprot	Q9M0F8	1e-96	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1E5W3H8	1e-132	A0A1E5W3H8_9POAL; NAC domain-containing protein 73
STRING	Pavir.J36494.1.p	1e-129	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	2e-98	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]