PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00025.1.g03060.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 203aa    MW: 21335 Da    PI: 5.2093
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00025.1.g03060.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.4e-202171155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                  s+++GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Zjn_sc00025.1.g03060.1.sm.mk 21 SRFRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 71
                                  789*******.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-222180IPR016177DNA-binding domain
PfamPF008473.3E-142171IPR001471AP2/ERF domain
CDDcd000181.49E-202181No hitNo description
PROSITE profilePS5103225.2642279IPR001471AP2/ERF domain
SMARTSM003805.7E-362285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-332280IPR001471AP2/ERF domain
PRINTSPR003671.5E-112334IPR001471AP2/ERF domain
PRINTSPR003671.5E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDEQQFSTPT AEASGGDGGG SRFRGVRQRP WGKWAAEIRD PHKAARVWLG TFETAEAAAR  60
AYDEAALRFR GSRAKLNFPE DARLPPAGTV TSAATPTTAS STSAYPASAV SEYLQYQTLL  120
QGSGAHGGFP QYYGDGGAMS SSSGSYSFPA SSVTVASVPS STSSAPGYGE EAQWSWQESA  180
WNYPATATTG SWSGSSYYPP PSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-242079363ATERF1
3gcc_A1e-242079363ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563678e-86EU956367.1 Zea mays clone 1561370 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649697.24e-55ethylene-responsive transcription factor ABR1
RefseqXP_025809416.13e-55ethylene-responsive transcription factor ABR1-like
TrEMBLK7V4W96e-54K7V4W9_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G100727_P011e-54(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-23ethylene response factor 110