PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00025.1.g03110.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 229aa MW: 24006.8 Da PI: 4.5913

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00025.1.g03110.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35	3.1e-11	166	226	4	59
XCHHHCHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKk....aeieeLeekvkeLeaeNkaL.kkeleelkkevakl 59 ++r++r++kNRe+A rsR RK+ a+++eLe v +Le+e +L ++++e+ +k ++l Zjn_sc00025.1.g03110.1.sm.mk 166 VQRQKRMIKNRESAARSRDRKQvpgnAYVAELESQVSQLEEEQAELlREQVEQNQKRLQEL 226 58*****************988889************99875256666666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.9E-5	163	228	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.1E-10	166	228	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.36E-16	167	218	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.1E-11	168	227	No hit	No description
SuperFamily	SSF57959	6.59E-8	168	215	No hit	No description
PROSITE pattern	PS00036	0	170	185	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MASSRVASSQ PQAAGSSELA RFTSGSGIGS MTMDDIIRNI YGDEPPLSAV NAGEPVQPVP 60 AVAQDAAAVR RTSEEVWEEI SAAGGLSVPA PPLPPPPAAV VSVAGAGGAA SEMTLEDFLA 120 RDAGAARAPA MDGTIALGFP DGDVLGVGGG RARKRAPIDA IDRAVVQRQK RMIKNRESAA 180 RSRDRKQVPG NAYVAELESQ VSQLEEEQAE LLREQVEQNQ KRLQELRES

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961953.1	7e-71	G-box-binding factor 4
Swissprot	Q0JHF1	8e-44	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A368QHW4	2e-69	A0A368QHW4_SETIT; Uncharacterized protein
STRING	GRMZM2G132868_P01	4e-69	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	4e-10	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]