PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00025.1.g04730.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 270aa    MW: 30782.9 Da    PI: 9.0998
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00025.1.g04730.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.21.9e-1198172190
                          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCske.gkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                                   +fYn ++ e GF +r ++s+++       k++fv  ke g+++ ++         +++ r+gCk ++++++++d++w+v+ 
  Zjn_sc00025.1.g04730.1.sm.mk  98 NFYNLHSWEKGFGIRCNSSETN-------KNQFVVMKElGYPNAST---------KESVRCGCKSRMMLRRTDDHRWYVHL 162
                                   6999999999999999998887.......34555555425555554.........459*********************** PP

                          FAR1  81 leleHnHela 90 
                                   ++ +HnH+l+
  Zjn_sc00025.1.g04730.1.sm.mk 163 FVDNHNHKLS 172
                                   ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-898172IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEGDSRGAPA AWRRGAPLLP PSAPKHSRAA ASASASGLVD GLEDDHVTAS SQTRQIRVPK  60
VDYGDVKKAL LDFKNKPDGC VVVPKEEMSF DSYDEAFNFY NLHSWEKGFG IRCNSSETNK  120
NQFVVMKELG YPNASTKESV RCGCKSRMML RRTDDHRWYV HLFVDNHNHK LSESLGEKRH  180
WPSHKHLDMY TTDIIRHLRN NNITLTKLYG VMTSIFGSDG NPPFTKRKLK YLCGTLARDA  240
ATDDIKKTVE LFMRLHDEDP EFTYKIKLMQ
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.13e-11FAR1-related sequence 4