PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00026.1.g00080.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 179aa    MW: 19473 Da    PI: 9.9714
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00026.1.g00080.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.71.6e-326105199
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvi 80 
                                   aCa+Ck++rrkC ++C la yfpa+++++f+++h +FG++n++kl+ka  +e  r++a+++l++eA++r rdP +G+++ +
  Zjn_sc00026.1.g00080.1.am.mk   6 ACAVCKHQRRKCDPNCELAAYFPANRMNDFRALHLVFGVANLTKLIKANATEAaRRRAADTLTWEARWRERDPSEGCYREV 86 
                                   7**********************************************9977766*************************** PP

                        DUF260  81 lklqqqleqlkaelallke 99 
                                     l+++ + l+ae a+l++
  Zjn_sc00026.1.g00080.1.am.mk  87 VGLRRENAVLRAENAALRR 105
                                   ************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.2985107IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-296103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTGGGACAVC KHQRRKCDPN CELAAYFPAN RMNDFRALHL VFGVANLTKL IKANATEAAR  60
RRAADTLTWE ARWRERDPSE GCYREVVGLR RENAVLRAEN AALRRQGAAA FSAYGGARVA  120
NSNVAGGCYN GNRAAQTMLM GYTQDDRYLC PAADVRNGAG VVRSDAAITM IRGNKNNLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-164999103LOB family transfactor Ramosa2.1
5ly0_B2e-164999103LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-116HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314390.15e-64LOB domain-containing protein 7
TrEMBLA0A1E5VAI41e-62A0A1E5VAI4_9POAL; Uncharacterized protein
TrEMBLI1HDS91e-62I1HDS9_BRADI; Uncharacterized protein
STRINGBRADI2G08480.12e-63(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.13e-23LOB domain-containing protein 2