PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00026.1.g02080.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 121aa    MW: 13683.6 Da    PI: 9.9886
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00026.1.g02080.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.63.8e-19942134
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdae 34
                                    +ri+n +nrqvtfskRr g++KKA EL +LCda+
  Zjn_sc00026.1.g02080.1.sm.mkhc  9 ERIDNRTNRQVTFSKRRSGLMKKARELGILCDAD 42
                                    69******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.14E-19145IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-19156IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.591146IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-16323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-171042IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-162338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MGRGKIAIER IDNRTNRQVT FSKRRSGLMK KARELGILCD ADEQLLADEI IQLNQKGLAL  60
QKENIELKKE VSIAHRHKME LQKKLYASEG QSTSGDREHA SGASSEKGQD VVFPMNHLRI  120
D
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020984555.11e-23agamous-like MADS-box protein AGL16 isoform X7
RefseqXP_025613275.19e-24agamous-like MADS-box protein AGL16 isoform X6
TrEMBLA0A4P1QZH44e-22A0A4P1QZH4_LUPAN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3415534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.28e-19AGAMOUS-like 16