PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00027.1.g00780.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 232aa    MW: 24372.8 Da    PI: 9.1128
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00027.1.g00780.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.27.4e-323890357
                   ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                                  kv Y+eCl+NhAa+lGgh+vDGCgEfmps+g+    +alkCaACgCHR+FHR++ 
  Zjn_sc00027.1.g00780.1.sm.mk 38 KVSYRECLRNHAAALGGHVVDGCGEFMPSPGTG--DDALKCAACGCHRSFHRKDD 90
                                  799**************************7776..89****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-183989IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.8E-273989IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-264189IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.2414189IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.31E-5159200IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-10160197IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGASSTPPLA PAAVPRAPPT SSSGNGAGAA ASAAPLPKVS YRECLRNHAA ALGGHVVDGC  60
GEFMPSPGTG DDALKCAACG CHRSFHRKDD GQPRQLLLPA PAPAPPPPVT PTPPRVPLLM  120
PPPHPSYPHY VPPPFSYHGT PSGSGGTTTE SSSEERGTPS AHAAAQPARR KRFRTKFTPE  180
QKEQMLAFAE RLGHSIQCVL PDAVCKMRYI IDMHGVKSHL TPLINGRLEL QV
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961117.15e-67zinc-finger homeodomain protein 6-like
SwissprotB8AX533e-61ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A3L6SWE31e-72A0A3L6SWE3_PANMI; Zinc-finger homeodomain protein 6-like
STRINGPavir.Ca01004.1.p3e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-21zinc finger homeodomain 1