PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00027.1.g01020.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 103aa    MW: 11709.4 Da    PI: 8.0665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00027.1.g01020.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.43.2e-153055126
                                  --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                  +ktelC+ + + G C+yGdrC+FaHg
  Zjn_sc00027.1.g01020.1.sm.mk 30 FKTELCNKWEEIGACSYGDRCQFAHG 55
                                  79***********************8 PP
2zf-CCCH23.11.3e-076893126
                                  --S---SGGGGTS.--TTTTT-SS-SS CS
                       zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHg 26
                                  ykte Cr  ++ G +C+yG rC+F H+
  Zjn_sc00027.1.g01020.1.sm.mk 68 YKTEVCRMVHA-GvICPYGHRCHFRHS 93
                                  9**********.66**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.4E-192462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-112661IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-82956IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4882957IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-123055IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-126394IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-86494IPR000571Zinc finger, CCCH-type
SMARTSM003560.00136794IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5966795IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-46893IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MDGAAKGEEK GVKEQCTGGV EFEVYNQGMF KTELCNKWEE IGACSYGDRC QFAHGIAELR  60
PVIRHPRYKT EVCRMVHAGV ICPYGHRCHF RHSITPADRL LRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-243093467Butyrate response factor 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0985715e-76AC098571.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B10, complete sequence.
GenBankAC0988325e-76AC098832.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1268_B08, complete sequence.
GenBankAK1063545e-76AK106354.1 Oryza sativa Japonica Group cDNA clone:002-102-A03, full insert sequence.
GenBankAP0149615e-76AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126135e-76CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440301.11e-54zinc finger CCCH domain-containing protein 39 isoform X1
SwissprotQ6L5G18e-54C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLC5YW312e-53C5YW31_SORBI; Uncharacterized protein
STRINGSb09g029330.14e-54(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.16e-47C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]