PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00027.1.g01170.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 501aa MW: 54210.2 Da PI: 9.9562

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00027.1.g01170.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	155.9	7.1e-49	319	416	2	94
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse.....asdkcqrekrktingddllwalatlGfe 77 +eqdrflPian+srim++++P+n+ki+kdake+vqecvsefisf+tse asdkc +ekrktingddl+w+++tlGfe Zjn_sc00027.1.g01170.1.am.mk 319 KEQDRFLPIANISRIMRRAVPENGKIAKDAKESVQECVSEFISFITSEsvaylASDKCMKEKRKTINGDDLIWSMGTLGFE 399 89*******************************************9887778*********************** PP NF-YB 78 dyveplkvylkkyrele 94 +yveplk+ylk yre++ Zjn_sc00027.1.g01170.1.am.mk 400 EYVEPLKLYLKIYREFQ 416 *************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.1E-45	313	419	IPR009072	Histone-fold
SuperFamily	SSF47113	2.39E-32	321	418	IPR009072	Histone-fold
Pfam	PF00808	7.1E-22	324	393	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.6E-15	352	370	No hit	No description
PRINTS	PR00615	4.6E-15	376	394	No hit	No description
PRINTS	PR00615	4.6E-15	395	413	No hit	No description
Pfam	PF05678	7.5E-10	434	460	IPR008889	VQ

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MPNHNCAEQT TEQRLLLVSQ ITAGAQDYAN TLQGGIYLFT LDLQRAIEPK TIGGADELSE 60 SITTGEFWLR STSATATTKK TASSRRRRSV PPRHRITASE NLARARGRRP AVQAQPLGSA 120 PAVGVSEIWR ARDFWNGGSG PLRRAAGAQA EPAQGKNWGG RPEDGLVARK ERARVVPNAC 180 RPQSAPRQVK EKKTRGNAGS RPGGWQGSWL EMGCCDRMMW DGIAADVLDF LATNALTFTF 240 NAPDPAAGGV LSARAPPQST ALIPSAISVS VPVSKKSRHR HRSPLSPLAR PYNGGGCCFP 300 VPGFAMSEGE FTQESAGAKE QDRFLPIANI SRIMRRAVPE NGKIAKDAKE SVQECVSEFI 360 SFITSESVAY LASDKCMKEK RKTINGDDLI WSMGTLGFEE YVEPLKLYLK IYREFQPRPA 420 MSRDDEAKPL TVKIIETVFV EADTADEFKS VVQRLTGKDA VAPPEETTGR SPRAAPRIGA 480 GKDGGSRGDR EGGASGTKQN G

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MPNHNCAEQT TEQRLLLVSQ ITAGAQDYAN TLQGGIYLFT LDLQRAIEPK TIGGADELSE  60
SITTGEFWLR STSATATTKK TASSRRRRSV PPRHRITASE NLARARGRRP AVQAQPLGSA  120
PAVGVSEIWR ARDFWNGGSG PLRRAAGAQA EPAQGKNWGG RPEDGLVARK ERARVVPNAC  180
RPQSAPRQVK EKKTRGNAGS RPGGWQGSWL EMGCCDRMMW DGIAADVLDF LATNALTFTF  240
NAPDPAAGGV LSARAPPQST ALIPSAISVS VPVSKKSRHR HRSPLSPLAR PYNGGGCCFP  300
VPGFAMSEGE FTQESAGAKE QDRFLPIANI SRIMRRAVPE NGKIAKDAKE SVQECVSEFI  360
SFITSESVAY LASDKCMKEK RKTINGDDLI WSMGTLGFEE YVEPLKLYLK IYREFQPRPA  420
MSRDDEAKPL TVKIIETVFV EADTADEFKS VVQRLTGKDA VAPPEETTGR SPRAAPRIGA  480
GKDGGSRGDR EGGASGTKQN G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	5e-40	319	414	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	5e-40	319	414	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	6e-49	nuclear factor Y, subunit B8