PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00027.1.g01270.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 286aa    MW: 31294.6 Da    PI: 5.4091
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00027.1.g01270.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.11.6e-27124184158
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                   ldDg++WrKYGqKe+ g+++prsY+rCt++   +Cp++k+v+r++ dp v++++Y+g H +
  Zjn_sc00027.1.g01270.1.sm.mk 124 LDDGFSWRKYGQKEILGAKYPRSYFRCTYRntqNCPATKQVQRTEGDPLVFDVVYHGAHSC 184
                                   59***************************98899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-27111185IPR003657WRKY domain
SuperFamilySSF1182905.1E-25118184IPR003657WRKY domain
PROSITE profilePS5081121.505119183IPR003657WRKY domain
SMARTSM007746.0E-40124186IPR003657WRKY domain
PfamPF031064.5E-26125184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDESGGGGGR RTLASELARV QTIVRELEAN MDQQDLPAAA MEICGELASR VDRSLRIVRS  60
WVPGSASDWS TRGDGDTAGT GDAATDAQFK RRQSWLTNVS VCRKGKPSVQ RQVRVASVHD  120
TAALDDGFSW RKYGQKEILG AKYPRSYFRC TYRNTQNCPA TKQVQRTEGD PLVFDVVYHG  180
AHSCVQAAQR SADQQHLPPG LAGQEETSPR APETGGGLHA GFEPMTPFFS SAPAGADFGG  240
LSPMSLEWQL RSGYGAGMEV ERQLEEFFSN PCDSFQWDYQ DLYAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18124184868OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806380.13e-99probable WRKY transcription factor 30
TrEMBLA0A2T7EA476e-99A0A2T7EA47_9POAL; Uncharacterized protein
STRINGPavir.J01329.1.p1e-103(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-30WRKY family protein