PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00027.1.g03980.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 580aa    MW: 63371.1 Da    PI: 7.9895
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00027.1.g03980.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY24.17.2e-082122383359
                                   --EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY  33 pvkkkversaedpkvveitYegeHnhe 59 
                                   p+ k+v+r a+d+++v++tYeg Hnh+
  Zjn_sc00027.1.g03980.1.am.mk 212 PAEKQVQRLAKDTSIVVTTYEGVHNHP 238
                                   689***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007740.0025195239IPR003657WRKY domain
PROSITE profilePS508119.615209240IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-6211238IPR003657WRKY domain
SuperFamilySSF1182906.02E-5212239IPR003657WRKY domain
PfamPF031061.3E-4212238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MQWLSCGRWL LPHAALSRGE TRARMLGTFA QRLSPSILFP LTSAYPPVTA TLQLHPHGPT  60
YIDRYQAPDH VIDLAAVAVA RCWLDPAPME DSLRGVHQRN EALPHHQLSG LLAPPPVSAP  120
PQQQEEQPVC NNVIAATAGL APVGVVSCAP LVDWTSLLPP RAPGLLQLPA MAEADRAAAG  180
VQKTGGGEGS STVTTASGSS EGRREGEEEG EPAEKQVQRL AKDTSIVVTT YEGVHNHPCE  240
KLMEALNPIL RQLHFLSQIA QSVANQAQKN SNPAPPNEPS DRRRPPHSHV LTTYDRRGSS  300
PFRKPLDQEQ GVLLQLSSWS LLISAPKVAS GLHSTILVVW LPYPSDPASK ALGGRALSRY  360
LTDHVRCARS RGILPPYRWR LHAEHARPKL AGHPYVRCAR SRGTHPPYPS VPAMCAYAVR  420
GDEGIRGARD WIDFLAFLSG QSPPTIPDDL PRFPDEDNQA AMRADIEHML PPPLRWIEET  480
QTQRRRLFTL QFKLLLVTDS FAAELVTLWG PVTNSQFGIG VEDGWQHGLV MAVGVEANHG  540
LRGMGAAQGA GDGEQVDLGY GLERTACIWP VTVRVRCRQR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560661e-40EU956066.1 Zea mays clone 1556750 mRNA sequence.
GenBankEU9580741e-40EU958074.1 Zea mays clone 1671428 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
GenBankEU9601611e-40EU960161.1 Zea mays clone 222248 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
GenBankKJ7282451e-40KJ728245.1 Zea mays clone pUT6522 WRKY transcription factor (WRKY119) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.12e-19WRKY DNA-binding protein 56