PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00028.1.g01380.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 413aa MW: 42115.8 Da PI: 6.0056

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00028.1.g01380.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.4	8.7e-41	106	250	2	132
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ + s +s Zjn_sc00028.1.g01380.1.sm.mk 106 TVAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANFStLNISMRSG 186 5789*****************************************************************999433332222 PP TCP 82 asnsssgkaaksaa.kskksqksaasalnlakesr...............akarararertrekmri 132 a+ +++a++++a ++++++ +++ ++ +++ a a r+r re+ ++ Zjn_sc00028.1.g01380.1.sm.mk 187 AA---AARASPFSAlALHPQPHDMSAMMGYHPHHHflppqqpqessqdpnAGGAAYVRKRYREDLFK 250 22...33555555557777788877788887777767666666655555544444455555555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.8E-37	112	271	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.31	112	166	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MDHGGGGGGG GVPSSSNSAG ASAGGGGTSG SRGGEPQQHP HHAFYYTGPA APAGSNSGVP 60 PPPPSQQQAS PFAGALAITP VPAGDQAQPS ADKKAVVAAA PAAAGTVAKR PSKDRHTKVD 120 GRGRRIRMPA LCAARVFQLT RELGHKSDGE TIEWLLQQAE PAILAATGTG TIPANFSTLN 180 ISMRSGAAAA RASPFSALAL HPQPHDMSAM MGYHPHHHFL PPQQPQESSQ DPNAGGAAYV 240 RKRYREDLFK DDDDEDTNRQ DPKAREAQQQ AAAAPSAAMW AMAPNTAAPG GAFWMLPVSA 300 TSAAAAAAAA RPAEQPMWSF GAAAAGGSGT TVQAPLQFMS RAATYPTAGG GNDTNLGMFA 360 AVNPYNRGAN EDQQHEAEQQ RQRGGGDGGA AEDEEDGDDS GEENHGGDNN SSQ

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MDHGGGGGGG GVPSSSNSAG ASAGGGGTSG SRGGEPQQHP HHAFYYTGPA APAGSNSGVP  60
PPPPSQQQAS PFAGALAITP VPAGDQAQPS ADKKAVVAAA PAAAGTVAKR PSKDRHTKVD  120
GRGRRIRMPA LCAARVFQLT RELGHKSDGE TIEWLLQQAE PAILAATGTG TIPANFSTLN  180
ISMRSGAAAA RASPFSALAL HPQPHDMSAM MGYHPHHHFL PPQQPQESSQ DPNAGGAAYV  240
RKRYREDLFK DDDDEDTNRQ DPKAREAQQQ AAAAPSAAMW AMAPNTAAPG GAFWMLPVSA  300
TSAAAAAAAA RPAEQPMWSF GAAAAGGSGT TVQAPLQFMS RAATYPTAGG GNDTNLGMFA  360
AVNPYNRGAN EDQQHEAEQQ RQRGGGDGGA AEDEEDGDDS GEENHGGDNN SSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT083691	1e-109	BT083691.1 Zea mays full-length cDNA clone ZM_BFb0029C09 mRNA, complete cds.
GenBank	KJ726951	1e-109	KJ726951.1 Zea mays clone pUT3645 TCP transcription factor (TCP12) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808168.1	1e-122	transcription factor PCF3-like
Swissprot	Q53PH2	2e-65	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	A0A3L6T4N8	1e-133	A0A3L6T4N8_PANMI; Transcription factor PCF3-like isoform X2
STRING	GRMZM2G089638_P01	1e-113	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	3e-41	TCP family protein