PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00028.1.g03530.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 379aa    MW: 40999.5 Da    PI: 7.251
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00028.1.g03530.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.44.1e-51121511129
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                                     lppGfrFhPtdee+v+ yL +k  + +    ++i+ v+++++ePwdLp+k+k +ekewyfF+++d ky+tg+r+nrat+
  Zjn_sc00028.1.g03530.1.sm.mkhc  12 LPPGFRFHPTDEEVVTSYLVPKSLNPTSFNPRAIAVVNLNRCEPWDLPSKAKMGEKEWYFFCQKDMKYPTGTRTNRATE 90 
                                     79********************99988666688***************99999************************** PP

                             NAM  80 sgyWkatgkdkevlsk...........kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                     +gyWkatgkd+e+++            +++l+g+kktLvfy+grap+g+kt+Wvmhe+rle
  Zjn_sc00028.1.g03530.1.sm.mkhc  91 KGYWKATGKDREIFKPgaspgdgggrrDDQLIGTKKTLVFYTGRAPRGTKTNWVMHEFRLE 151
                                     ***************9888888877766667***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-589176IPR003441NAC domain
PROSITE profilePS5100555.64212176IPR003441NAC domain
PfamPF023658.2E-2713150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MVDQEEQGDL PLPPGFRFHP TDEEVVTSYL VPKSLNPTSF NPRAIAVVNL NRCEPWDLPS  60
KAKMGEKEWY FFCQKDMKYP TGTRTNRATE KGYWKATGKD REIFKPGASP GDGGGRRDDQ  120
LIGTKKTLVF YTGRAPRGTK TNWVMHEFRL EGAYRNHPNL RLSPKDEWVV CKVFHKSNGE  180
EDKKAAAAAV EDFAAGTPTV SSISVDATGA VDGGDEFLDS MFFDPYFDYS TGTFPADNHA  240
ATMMNDVGGF FGPPYDAFDD DRTSRNPLHQ AAAVSSATVP LVPPSSSGSY RSSWNTVPSH  300
YATGSSSYNL HDQAMMARAL GGAGFPNFAG GGGFPSYSVP GISQQNSLRR RGYATGRLAS  360
SAAAAAANIT GQAAKNLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-48918114170NO APICAL MERISTEM PROTEIN
1ut4_B3e-48918114170NO APICAL MERISTEM PROTEIN
1ut7_A3e-48918114170NO APICAL MERISTEM PROTEIN
1ut7_B3e-48918114170NO APICAL MERISTEM PROTEIN
4dul_A3e-48918114170NAC domain-containing protein 19
4dul_B3e-48918114170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977422.11e-119NAC domain-containing protein 77
SwissprotQ5CD175e-98NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLK3Y8761e-118K3Y876_SETIT; Uncharacterized protein
STRINGSi010417m1e-119(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.25e-75Arabidopsis NAC domain containing protein 87