PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00028.1.g03540.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 403aa    MW: 43929 Da    PI: 6.9693
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00028.1.g03540.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.15.2e-51171451128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                                     lp+GfrFhPtdeel+v+yL ++++  ++++  +i+ev+iy+++PwdLp+k+  +e+ewyfFs+rd+ky++g+r+nra+ 
  Zjn_sc00028.1.g03540.1.am.mkhc  17 LPAGFRFHPTDEELIVHYLMNQAACVPCPV-PIIAEVNIYECNPWDLPRKAVFGENEWYFFSPRDRKYPNGSRPNRAAG 94 
                                     799***************************.88***************8777899************************ PP

                             NAM  80 sgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     +gyWkatg+dk+v+++  +ge+vg+kk Lvfy gr p+g+ktdW+mheyrl
  Zjn_sc00028.1.g03540.1.am.mkhc  95 NGYWKATGTDKAVVAAasTGETVGVKKALVFYMGRPPRGVKTDWIMHEYRL 145
                                     **************98888999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-639179IPR003441NAC domain
PROSITE profilePS5100557.71217179IPR003441NAC domain
PfamPF023652.0E-2518145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MANSRSSSSS CRTMPSLPAG FRFHPTDEEL IVHYLMNQAA CVPCPVPIIA EVNIYECNPW  60
DLPRKAVFGE NEWYFFSPRD RKYPNGSRPN RAAGNGYWKA TGTDKAVVAA ASTGETVGVK  120
KALVFYMGRP PRGVKTDWIM HEYRLTVGNG KTTRRAAGSS SSSSSMRLDD WVLCRIHKKS  180
NNFQFSDQEQ EGSSIVEEAD SSLNNTNMNS NGGAPSPASE QASHASDAGD HQFQLPPHLP  240
KSCSLTDLLN TIDCSVLSQL LLDAPAEPEP EPQPQPQQQG QSPLIYYATP ACPQPLLLKS  300
SLNGSQLQVD ALFSDYSAGY YSRSSGLKRK RSSCDDGSSS RRKLQLLPSE ATFFGSASGY  360
CNQQLAEAAS SSGGGFQYSG LLSHPLLNQQ QLLLNGHLEM QMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-731618414173Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828039.11e-143NAC transcription factor 29-like
TrEMBLA0A2T7CJJ91e-142A0A2T7CJJ9_9POAL; Uncharacterized protein
STRINGSi026530m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-79NAC-like, activated by AP3/PI