PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00028.1.g04350.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 211aa    MW: 22793.9 Da    PI: 7.8551
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00028.1.g04350.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.54.4e-38171271100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal...........peeeredamsslvyeAearar 70 
                                   +Ca+Ck+lrr+C+++Cv+apyfp ++p+kfa+vhk+FGasnv+k+l+             p ++r da+sslvyeA+ar+r
  Zjn_sc00028.1.g04350.1.sm.mk  17 PCASCKLLRRRCTQECVFAPYFPPDDPRKFAIVHKVFGASNVSKMLQVRpaatfivmhelPAQQRADAVSSLVYEANARMR 97 
                                   7*******************************************98743222333333339999***************** PP

                        DUF260  71 dPvyGavgvilklqqqleqlkaelallkee 100
                                   dPvyG++g i+ lqqq++ql+ +lal+k+e
  Zjn_sc00028.1.g04350.1.sm.mk  98 DPVYGCAGAISYLQQQVSQLQMQLALAKAE 127
                                   **************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.03716128IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3817125IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAGNGSSIGG SSSSSPPCAS CKLLRRRCTQ ECVFAPYFPP DDPRKFAIVH KVFGASNVSK  60
MLQVRPAATF IVMHELPAQQ RADAVSSLVY EANARMRDPV YGCAGAISYL QQQVSQLQMQ  120
LALAKAEILM HHNDGQLLGH SAAAPASTKQ QQLEQQQMDA LQDYGSMFMQ NGLTDTLNTA  180
AAAHQQQFLS SGFGSGGMLH ETCLKKESLW A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-451714811130LOB family transfactor Ramosa2.1
5ly0_B3e-451714811130LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1008524e-63FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661028.13e-78LOB domain-containing protein 12
SwissprotQ8LBW34e-59LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A368S2P56e-77A0A368S2P5_SETIT; Uncharacterized protein
STRINGSi026864m2e-74(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-49LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]