PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00029.1.g00180.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 495aa    MW: 53264 Da    PI: 9.0171
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00029.1.g00180.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.82.3e-15420445126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +ktelC+ + +tG C+yGd+C+FaHg
  Zjn_sc00029.1.g00180.1.am.mk 420 FKTELCNKWEETGACPYGDQCQFAHG 445
                                   79***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-18414452IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-10416451IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601419447IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10419446IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-12420445IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-10453483IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7454483IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338457485IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4457484IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MIAVALARAL VGSQCARWCG VTGKEGNRGG SAIELGSAEN DWDDGPVKPK QARPTRLGSS  60
ISDYLFALRA YDDDEPPPRS GSPVVRPAHS PAVLALADTR APRVSPAMDM LPGRPGYINH  120
DATRSPARTH RTGPSSPTQI SGSSSAPRTS ALRSGRCSLL SSSSDAAMQE ALISPANADR  180
LRSALELKSF AFGDQRLSSP RHFGDDALPS FGFSSPSPHA TSVSLSPSSS ASLVDDGDDA  240
AAGDVTGHRL QLARLALQYQ EAADRYELCV ARLAEAADEA AALRRENAQL RVANCDLARR  300
LALLSGKQTA PAAIAEEIRR LCHGEQNQNA VPAAAERAPE KLTLLPKSIS VRSKDYLKMN  360
KAPVTPVANN RRPRASNPTV NNHSSLRLYV DADSGMKGEK SKVQRSAGGM ELEVYNQGMF  420
KTELCNKWEE TGACPYGDQC QFAHGVAELR PVIRHPRYKT QVCRMVLAGE PCPYGHRCHF  480
RHTLTPAERL LLPRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21420482466Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154780.11e-134zinc finger CCCH domain-containing protein 9-like isoform X1
SwissprotA2ZVY51e-111C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A287L6P61e-134A0A287L6P6_HORVV; Uncharacterized protein
STRINGMLOC_5666.31e-135(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.19e-52C3H family protein