PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00029.1.g01130.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 211aa    MW: 22081.6 Da    PI: 7.0267
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00029.1.g01130.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.82e-2091125135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Zjn_sc00029.1.g01130.1.am.mk  91 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 125
                                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-1583127No hitNo description
SMARTSM004011.8E-1985135IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.69485121IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-1789125IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.34E-1390122No hitNo description
PfamPF003204.4E-1891125IPR000679Zinc finger, GATA-type
PROSITE patternPS00344091116IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGSCGGG CSLLFSGDHH HYYMQCDSDG AYGGSVDCTL SLGTPSTRRA  60
EAGAARAHQP NGGTHWEQSS GRQQESAARR CANCDTTSTP LWRNGPRGPK SLCNACGIRY  120
KKEERRAAAA AVAPSPTLAS VDSGMEYAAG QPQQWGWYGS AAVAKAAASS FGMFGDAGAE  180
DGPCLPWGIG VMPPSPAFGS VREMPSLFQY Y
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184096.12e-91GATA transcription factor 20-like
SwissprotQ9ZPX02e-27GAT20_ARATH; GATA transcription factor 20
TrEMBLA0A1E5VS134e-92A0A1E5VS13_9POAL; Uncharacterized protein
STRINGMLOC_5372.12e-88(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.17e-28GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]