PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00029.1.g01320.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 403aa    MW: 42551.6 Da    PI: 7.9937
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00029.1.g01320.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.3e-32212269259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     +Dgy+WrKYGqK vk+s++prsY+rCt+++Cpvkk+vers  dp vv++tYeg+H+h+
  Zjn_sc00029.1.g01320.1.am.mkhc 212 EDGYRWRKYGQKAVKNSPYPRSYHRCTTQRCPVKKRVERSYLDPAVVITTYEGKHTHP 269
                                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-33197271IPR003657WRKY domain
SuperFamilySSF1182905.1E-28203271IPR003657WRKY domain
PROSITE profilePS5081131.605206271IPR003657WRKY domain
SMARTSM007742.2E-37211270IPR003657WRKY domain
PfamPF031061.5E-24212269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MSSPGEYLYY YDELASLFAQ PTSDTMQQRQ EASCFPDFLL AGPPTATRFQ QLQSPTSDVM  60
QHLLAGMPMG DYDPLFGALD LPVAAADDVV KRELVVDTTS GGGSRTPSTA PVTPNATSSM  120
SSSSSEAAGG GRGGFGAGGF GAAKEDSPVG RCKKEEGDGE DSNVAGKGDQ EDGDKCKRGA  180
GSAAKAKGKG GEKRQQQPRF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYHRCTTQ  240
RCPVKKRVER SYLDPAVVIT TYEGKHTHPI PAALRGSTHL LAAQAAHGLH HHQFGSLAPM  300
PHTMGAAAPF GRTGGGGGID MLGLLQPRGA SHRAMLPTTM THASSHGLAA GPVSSSVAMS  360
AATTTTSSAP SPSSLQMQHM MAQDFGFLQD MMMPSFVHSN VQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27202272878Probable WRKY transcription factor 4
2lex_A2e-27202272878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0681161e-123BT068116.1 Zea mays full-length cDNA clone ZM_BFb0045M20 mRNA, complete cds.
GenBankKJ7275431e-123KJ727543.1 Zea mays clone pUT5403 WRKY transcription factor (WRKY95) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169830.11e-107uncharacterized protein LOC100383722
TrEMBLC0PIJ71e-106C0PIJ7_MAIZE; Putative WRKY transcription factor 71
STRINGGRMZM2G151763_P011e-107(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.16e-46WRKY DNA-binding protein 28