PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00029.1.g02540.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 224aa    MW: 23949 Da    PI: 6.2274
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00029.1.g02540.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171462148
                                  TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+W++eEde l  +v+ +G+g +W + +++ g++R++k+c++rw++yl
  Zjn_sc00029.1.g02540.1.am.mk 14 RGPWSPEEDEVLRSYVQNHGTGgNWIALPHKAGLNRCGKSCRLRWLNYL 62
                                  89*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-22565IPR009057Homeodomain-like
PROSITE profilePS5129420.936966IPR017930Myb domain
SMARTSM007171.6E-111364IPR001005SANT/Myb domain
PfamPF002497.9E-161462IPR001005SANT/Myb domain
SuperFamilySSF466891.59E-181588IPR009057Homeodomain-like
CDDcd001674.48E-91662No hitNo description
Gene3DG3DSA:1.10.10.601.7E-46689IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPE EDEVLRSYVQ NHGTGGNWIA LPHKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEQEDRIIC SFYSSIGSSF GAMYSSPSAL QPPALAPRYV DGAVPAPQQL  120
HAPSLTEYSP AAPPPPPPQP TGGVANSWAT TGGMTGLEDM FLPELLGSGE FPHGDLFGGG  180
FGSMLLQDRA PSSLQELAAY YFPNAQAEMW ADAKAPAGLC HSLT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794311e-115HF679431.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB25 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675187.19e-58transcription factor MYB4
TrEMBLA0A3L6T1M06e-61A0A3L6T1M0_PANMI; Transcription factor RAX2-like
STRINGPavir.J11789.1.p4e-61(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.16e-50myb domain protein 84