PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00029.1.g05060.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 269aa    MW: 29512.6 Da    PI: 9.445
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00029.1.g05060.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind92.16.4e-29211342103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........ CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........ 74 
                                   F+ k++++++d++++ +++w   +n+f+v+d+  f++ +Lp+yFkh+nfaSFvRQLn+Y     +  +++ +s        
  Zjn_sc00029.1.g05060.1.am.mk  21 FVAKTFHMVSDPATDAVVRWGVASNTFLVVDPAAFSDYLLPSYFKHRNFASFVRQLNTYVIFDASPARATFSSerscralg 101
                                   9********************999***********************************8666665555544457787777 PP

                                   ....XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  75 ....kekiweFkhksFkkgkkellekikrkkse 103
                                       + + weF+h+sF +g+++ll  i rkk++
  Zjn_sc00029.1.g05060.1.am.mk 102 frkvDADRWEFAHESFLRGQTQLLPLIARKKKN 134
                                   665449************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.8E-3211125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-3617131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.9E-2618131IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.7E-2521131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-112144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-115971IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-117284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGSECKLQLH AEQQAGAIAP FVAKTFHMVS DPATDAVVRW GVASNTFLVV DPAAFSDYLL  60
PSYFKHRNFA SFVRQLNTYV IFDASPARAT FSSERSCRAL GFRKVDADRW EFAHESFLRG  120
QTQLLPLIAR KKKNKPGCGG RELRDEGEEV RGTIRAVQRL REEQRGMDEE LQAMDRRLQA  180
AESRPGQMMA FLAKLADEPG VVLRAMLAKK EELAAAGGNG ASPPALEAPG KRRRISGAET  240
GRGDLGGVAD QGMGAVQFPF SALGQVFYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-211813126129Heat shock factor protein 1
5d5v_B2e-211813126129Heat shock factor protein 1
5d5v_D2e-211813126129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230234KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663167e-93AK066316.1 Oryza sativa Japonica Group cDNA clone:J013066G03, full insert sequence.
GenBankAP0033097e-93AP003309.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0036G09.
GenBankAP0035607e-93AP003560.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1060H01.
GenBankAP0149577e-93AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3444937e-93AY344493.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311267.11e-123heat stress transcription factor C-1b
SwissprotQ942D61e-122HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLA0A1B6Q5W31e-122A0A1B6Q5W3_SORBI; Uncharacterized protein
STRINGSb03g033750.11e-124(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-60heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]