PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00029.1.g05950.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 103aa    MW: 11296.7 Da    PI: 8.4987
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00029.1.g05950.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind77.22.7e-241472260
                                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
                  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                                  Fl+k+ye+++d++++ ++ w+  g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+Y
  Zjn_sc00029.1.g05950.1.sm.mk 14 FLSKTYEMVDDRATDAVVAWTPPGTSFVVANQAEFCRDLLPKYFKHNNFSSFVRQLNTY 72
                                  9********************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.0E-27976IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.86E-23978IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-271098IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-161437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-211474IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-165264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-166577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MEGGGGGGSS LPPFLSKTYE MVDDRATDAV VAWTPPGTSF VVANQAEFCR DLLPKYFKHN  60
NFSSFVRQLN TYVSERHPSP LATFVPHRTR FLGRVSAADF IGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-224721987Heat shock factor protein 1
5d5v_B4e-224721987Heat shock factor protein 1
5d5v_D4e-224721987Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2034567e-94KT203456.1 Paspalum vaginatum clone SpCT4 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816816.12e-42heat stress transcription factor A-4b isoform X2
SwissprotQ94J167e-35HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A1E5V8K72e-44A0A1E5V8K7_9POAL; Heat stress transcription factor A-4b
STRINGSb03g034630.18e-42(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.12e-28heat shock factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]