PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00031.1.g01430.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 228aa MW: 25721.6 Da PI: 7.7693

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00031.1.g01430.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	95.9	2.6e-30	17	107	1	87
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k ltpsdv+k++rlv+pk++ae++ g ++e++ l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++g Zjn_sc00031.1.g01430.1.am.mk 17 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSSEKGLILSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLDAG 97 99**************************88889999*************************************** PP -EEEEEE-SS CS B3 78 DfvvFkldgr 87 D+v F++++ Zjn_sc00031.1.g01430.1.am.mk 98 DVVHFERMRG 107 ****7754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-40	12	128	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.24E-29	15	121	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.74E-29	15	107	No hit	No description
SMART	SM01019	4.2E-22	17	121	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.789	17	121	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.0E-28	17	120	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MYTNLHYHHY YERERLFEKP LTPSDVGKLN RLVIPKQHAE RYFPLSGDSS EKGLILSFED 60 EAGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKHLDAGDVV HFERMRGFGI GDRMFIGFRR 120 RGESATPAAA PLPAVHVAAA AQSAGEQQQP WSPMCYSTSG SYPNSPANSY AYRHSVDHDP 180 SNTPHAGESS AASVSSRRLR LFGVNLDCGP EPEAEAPTFP EPNYWSAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-50	12	121	3	113	B3 domain-containing transcription factor NGA1
5os9_B	1e-50	12	121	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827829.1	1e-127	B3 domain-containing protein Os11g0156000-like isoform X1
Swissprot	Q53QI0	1e-104	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	A0A3L6PZ85	1e-129	A0A3L6PZ85_PANMI; Uncharacterized protein
STRING	Pavir.Hb01814.1.p	1e-122	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.2	3e-56	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]