PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00031.1.g01620.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 689aa    MW: 72613.9 Da    PI: 6.9011
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00031.1.g01620.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-093964331954
                                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Zjn_sc00031.1.g01620.1.sm.mkhc 396 FEHflHPYPKDSDKMMLAKQTGLTRSQVSNWFINARVR 433
                                     664459******************************88 PP
2BELL902.5e-29245327172
                            BELL   1 erqelqkkkakLlsllee...........VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdai 68 
                                     erqelq+kk+kL+++l+e           V++rY+qy+ q+q+v ssFea+ag  sa+ Yt+lAl++iSr+FrcL+dai
  Zjn_sc00031.1.g01620.1.sm.mkhc 245 ERQELQMKKSKLINMLDEsmantaglrvqVERRYRQYRGQMQAVSSSFEAAAGPHSARTYTALALRTISRQFRCLRDAI 323
                                     79**************96666666666669************************************************* PP

                            BELL  69 aeqi 72 
                                     a q+
  Zjn_sc00031.1.g01620.1.sm.mkhc 324 AAQV 327
                                     *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.6E-52170325IPR006563POX domain
PfamPF075261.4E-45175324IPR006563POX domain
PROSITE profilePS5007112.034374437IPR001356Homeobox domain
CDDcd000865.75E-13377438No hitNo description
SMARTSM003892.7E-9377441IPR001356Homeobox domain
SuperFamilySSF466894.71E-17379443IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28380443IPR009057Homeodomain-like
PfamPF059203.7E-18394433IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MDPVLPLNSL HHPQIIALVS AIKMAAYYQG GAGTEIQAST DGLQTLYLMN PSYAGYGDSS  60
STPAPGGANM TFLNSAVSTM TPASFGVHQQ STPGVQHFVG IPLQEPPSGY SLWTPASTGA  120
APDMSQPQQT TPGAAGVSAV LSLSSREAPP VTVAAVAGEE GKYLGALSAT SQVQMVMNSK  180
YLKAAQELLD EVVSVTKGAE DAKTATAKSA AAVKKKEDSE GVSGGGTEDG GGAKSGSALE  240
LSTAERQELQ MKKSKLINML DESMANTAGL RVQVERRYRQ YRGQMQAVSS SFEAAAGPHS  300
ARTYTALALR TISRQFRCLR DAIAAQVRAA SRALGEDADA AAAAGGRTVG SRLRYIDHHL  360
RQQRALQQLG MMQGGAWRPQ RGLPERSVSI LRAWLFEHFL HPYPKDSDKM MLAKQTGLTR  420
SQVSNWFINA RVRLWKPMVE EMYLEETKDR DAAAGNEEGK SGGVGKSGTV EDDNGGGDGT  480
PRPDRETAKG VRVHGSSLLE LAGDQQATHA GLYGDDYEDE DGADAMQRRI KKARGDEAAA  540
AAPGSTFHHH VHEMAALHAQ AAAAARQQHE QVSHRELLMK FMESGAGARD QHQQDGRYSL  600
FAQAAQAPYG QFSSEPFAFA GNGGVSLTLG LPHGAGAGGG AADQTASFLM GGSTAGNNSV  660
SHGAAAGGYD MNMQSTKSFA AQLMRDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A2e-17383441159Homeobox protein Meis2
5bng_B2e-17383441159Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0860920.0BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827941.10.0BEL1-like homeodomain protein 1
RefseqXP_025827942.10.0BEL1-like homeodomain protein 1
RefseqXP_025827943.10.0BEL1-like homeodomain protein 1
RefseqXP_025827944.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-99BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A1E5WEK50.0A0A1E5WEK5_9POAL; BEL1-like homeodomain protein 1
STRINGPavir.Ha01822.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.38e-64BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]