PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00031.1.g01750.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 175aa MW: 19992 Da PI: 5.1407

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00031.1.g01750.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.8	5.1e-17	31	95	1	55
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwe 55 +Wt+++v++Li+a+++++e+++++ +kk++W+++sk+m +rg+++sp+qC++k + Zjn_sc00031.1.g01750.1.am.mkhc 31 KWTDSMVKLLITAVSYTGEDYGADLgggkrnfsimQKKGKWKAISKVMGDRGCHVSPQQCEDKCK 95 7*******************9744455777788*************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.8E-12	29	96	No hit	No description
CDD	cd00167	0.0095	31	96	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MSDDEEHELT EDANENPSGK GKKSSAWHRM KWTDSMVKLL ITAVSYTGED YGADLGGGKR 60 NFSIMQKKGK WKAISKVMGD RGCHVSPQQC EDKCKEDHDS RRDVSGDVDE DDQSADSDYY 120 EDDEEHHAVH TNMREPSMFK RMRHSDLALV NSSPQEGSAR NLFCIRMRFA WDLVQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001143969.2	1e-49	uncharacterized protein LOC100276786
Refseq	XP_020403187.1	1e-49	uncharacterized protein LOC100276786 isoform X1
TrEMBL	A0A1E5UTG1	1e-58	A0A1E5UTG1_9POAL; Uncharacterized protein
STRING	Sb05g003890.1	2e-48	(Sorghum bicolor)
STRING	GRMZM2G126148_P02	2e-48	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP44648	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	3e-28	sequence-specific DNA binding transcription factors