PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00031.1.g02750.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 862aa    MW: 92351.5 Da    PI: 7.9229
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00031.1.g02750.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.7e-07722752234
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkg 34 
                                     ++WT eE +ll+++++++  + W+ Ia ++  +
  Zjn_sc00031.1.g02750.1.sm.mkhc 722 DKWTDEEILLLLEGIEKYNDN-WDDIAGHLK-R 752
                                     58****************977.*******98.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.3E-9258IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.29E-357327IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029739.28415337IPR020683Ankyrin repeat-containing domain
SMARTSM002487.21544IPR002110Ankyrin repeat
CDDcd002041.52E-1915140No hitNo description
PfamPF127962.2E-1120110IPR020683Ankyrin repeat-containing domain
SMARTSM002484005282IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.2E-1759182IPR020683Ankyrin repeat-containing domain
SMARTSM0024817086119IPR002110Ankyrin repeat
SMARTSM00248220120149IPR002110Ankyrin repeat
SMARTSM00248300175204IPR002110Ankyrin repeat
PfamPF127961.0E-7180266IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.6E-27183327IPR020683Ankyrin repeat-containing domain
SMARTSM002489.9211243IPR002110Ankyrin repeat
CDDcd002046.56E-20212337No hitNo description
SMARTSM002482100245277IPR002110Ankyrin repeat
PfamPF138571.5E-7275323No hitNo description
PROSITE profilePS500889.805281305IPR002110Ankyrin repeat
SMARTSM002480.068281310IPR002110Ankyrin repeat
PfamPF139621.8E-18365465IPR026961PGG domain
PROSITE profilePS5129311.218719765IPR017884SANT domain
SMARTSM007170.0014720767IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-5721751IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-4722751IPR009057Homeodomain-like
CDDcd001671.48E-4723750No hitNo description
PfamPF164951.7E-11749790IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
VVQHGRCDVP EATAEGNTVL HVAAERGHDE LIREICLRFR EKKGLLSRRN SALDTPLHRA  60
ARAGRVDAVK FLERGEEGVV GCKNEAGDTA LHQAASHGHG ATVEALLVSA EATASELNAA  120
GVSPMYLAAM SGSVQAVRAI ATTRRDASAA GTGAQNALHA AVFQSAEMAG EADRDGSTQL  180
HFAVSDGQRS VVRATLRAAP PRTAYRKDHA GGLSALHVAA RMGHDRVVGE LLRSCPHAGE  240
LRDDGGATFL HAAAREKRAS VVSLAVKDPT LRGLLDARDR DGNTPLHLAV AAGAPRGAET  300
LLRKGRVRAD VLNVDGHTPF DLAEKSTSFF TMVNLVLILV AFRAQSRLHR QDHLKPWSGR  360
DIGQGIEKTS DSLAVVAVLI ATAGFQVPGG YGDDGTANLK DKPAFTIFMV LIIFAAATSV  420
VTVILLVFGK ASRSNGSWKS FAMALHGIWV SLNCLMLAFY TAITVVSNIS NRSPAGHSLP  480
LTCFPYFPVG LFRAPLAAVV LRRPQPTMPR KASKASDSRL KWRKRKRNPD ASPSKPSASA  540
AVDDHSDGSD YDEDATAAPG DGANDAAAAP AGTRGSEDPA LDLREAEVLS SVEVVSVFPS  600
AKRRVVNRPH PSVLALLDAE RSAHSGDGSA TSVAPAVENI SHGQLQVLSV VFPDHPSLTT  660
DPEKPSLYVC TPPPLMEGRG VPKQFEGRLH VVPKHSDWFT PGTVHRLERQ RVDGEKDGSD  720
CDKWTDEEIL LLLEGIEKYN DNWDDIAGHL KRLELKLKQF AEVETLLLKE CEQVERARQR  780
ISADRAQMRS VLSGATGTSL PGSTMPSYLF NPASMNPRPM AVPGSMPQAS MPASYTKNMQ  840
GQGHPYLQDE PIFDVHHVAG RQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5vkq_A5e-2213526801100No mechanoreceptor potential C isoform L
5vkq_B5e-2213526801100No mechanoreceptor potential C isoform L
5vkq_C5e-2213526801100No mechanoreceptor potential C isoform L
5vkq_D5e-2213526801100No mechanoreceptor potential C isoform L
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980237.10.0protein ACCELERATED CELL DEATH 6 isoform X1
TrEMBLA0A3L6Q5D70.0A0A3L6Q5D7_PANMI; SWI/SNF complex subunit SWI3C-like
STRINGSi026089m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42933