PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00032.1.g00670.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 281aa    MW: 30908.9 Da    PI: 8.8822
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00032.1.g00670.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-19108157255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+++tae+Aa a++ a+ +l+g
  Zjn_sc00032.1.g00670.1.am.mk 108 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAEQAALAYDGAAFRLRG 157
                                   59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.82E-30107167No hitNo description
Gene3DG3DSA:3.30.730.101.0E-31108166IPR001471AP2/ERF domain
SMARTSM003803.3E-36108171IPR001471AP2/ERF domain
PROSITE profilePS5103223.261108165IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-22108166IPR016177DNA-binding domain
PfamPF008471.4E-13109157IPR001471AP2/ERF domain
PRINTSPR003678.9E-11109120IPR001471AP2/ERF domain
PRINTSPR003678.9E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDRQWRRLHT AEEATTSKSL LASPLPIGTM EYRALIHALA NPAPATPAAP FMVDTKQSPA  60
MVHGSRNYHM ITPAQVAHWH RHDWRHHGPA PRVMKRYCYG LTLPKAKLYR GVRQRHWGKW  120
VAEIRLPRNR TRLWLGTYDT AEQAALAYDG AAFRLRGDAA RLNFPELRCD GRHLAPPLHP  180
SVDAKLHAAT SAPPAPAASP PQPENADNQG SCCDSVASTT TTTTAADVAE VSSTGSTSSG  240
LNNPLPEMKQ FDFSGAPWDE ADGVALRKYP SLEIDWDAIL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20105170267ATERF1
3gcc_A6e-20105170267ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0984946e-75FP098494.1 Phyllostachys edulis cDNA clone: bphyem124a13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983222.11e-115ethylene-responsive transcription factor RAP2-13
SwissprotQ8H1E42e-47RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1E5UNC71e-121A0A1E5UNC7_9POAL; Ethylene-responsive transcription factor RAP2-13
STRINGSi036893m1e-115(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.17e-45related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]