PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00033.1.g01690.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 357aa    MW: 37581.5 Da    PI: 6.3874
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00033.1.g01690.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-18115167456
                                   -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++++ eq+++Le+ Fe  +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  Zjn_sc00033.1.g01690.1.am.mk 115 KRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 167
                                   44799***********************************************9 PP
2HD-ZIP_I/II128.33.3e-41113205193
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   e+krrls eqv++LE+sFe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L 
  Zjn_sc00033.1.g01690.1.am.mk 113 ERKRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDALL 193
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelke 93 
                                   +++++L++e+++
  Zjn_sc00033.1.g01690.1.am.mk 194 AQNKKLHAEITA 205
                                   *******99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-1990170IPR009057Homeodomain-like
SuperFamilySSF466892.82E-19107171IPR009057Homeodomain-like
PROSITE profilePS5007117.2109169IPR001356Homeobox domain
SMARTSM003892.5E-18112173IPR001356Homeobox domain
CDDcd000861.26E-16114170No hitNo description
PfamPF000468.6E-16115167IPR001356Homeobox domain
PRINTSPR000315.3E-6140149IPR000047Helix-turn-helix motif
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
PRINTSPR000315.3E-6149165IPR000047Helix-turn-helix motif
PfamPF021833.8E-12169208IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MATNGMAPSF FPANFLLQMQ QPLPHHHHLH PQQQAADHPH HHDHEHHLLA PPPPSLSPFL  60
HDFAGAMAPP PPMYPPDAVS DDLHAAEPQQ GGGAASDDEE GSAAAGGCGG AGERKRRLSV  120
EQVRTLERSF EVANKLEPER KAQLARALGL QPRQVAIWFQ NRRARWKTKQ LEKDYDALRR  180
QLDAARAEND ALLAQNKKLH AEITALKGGG GGGGGGAGGG GGRQEAASEL INLNVKETEA  240
SCSNRSENSS EINLDISRPA PAADESTMNS HRPAALPFYA SAFGGRSGGG SLDIDQLLQH  300
SHASAAPTME IGHGAGADTG AAAAGAGSFG SLLCGGAVVD EQPAFWPWAA DGHHNFQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117ERKRRL
2161169RRARWKTKQ
3206222KGGGGGGGGGAGGGGGR
4283289GGRSGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284121e-120KJ728412.1 Zea mays clone pUT6717 HB transcription factor (HB98) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796230.11e-144homeobox-leucine zipper protein HOX23-like
SwissprotA2Z7341e-100HOX23_ORYSI; Homeobox-leucine zipper protein HOX23
SwissprotQ94GL51e-100HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23
TrEMBLA0A1E5V6C71e-159A0A1E5V6C7_9POAL; Homeobox-leucine zipper protein HOX23
STRINGPavir.Ia02126.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.17e-51HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]