PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00034.1.g01870.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 246aa    MW: 27158.6 Da    PI: 8.3107
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00034.1.g01870.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1443.5e-4593184394
                         NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl 83 
                                   ++d++lPianv+rimk vlP +akisk aket+qec++efi+fvt+eas++c+re+rktingdd+++a+ +lG+++y++++
  Zjn_sc00034.1.g01870.1.am.mk  93 AHDNLLPIANVGRIMKDVLPPQAKISKRAKETIQECATEFIGFVTGEASERCRRERRKTINGDDICHAMRSLGLDNYADTM 173
                                   6899***************************************************************************** PP

                         NF-YB  84 kvylkkyrele 94 
                                   + yl++yre e
  Zjn_sc00034.1.g01870.1.am.mk 174 RRYLQRYRESE 184
                                   *********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.8E-4192184IPR009072Histone-fold
SuperFamilySSF471131.24E-3295184IPR009072Histone-fold
PfamPF008081.1E-2398161IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-14125143No hitNo description
PRINTSPR006151.2E-14144162No hitNo description
PRINTSPR006151.2E-14163181No hitNo description
Gene3DG3DSA:1.10.20.104.7E-4187219IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
LYYCAFAREL SSSAVVSTLI RLDPRPRAVA LDAIIVAMRG PHGLSADVAR LGHPSITPSP  60
PQEKNAASLA APARASSSAS TEVDGGGGGM NSAHDNLLPI ANVGRIMKDV LPPQAKISKR  120
AKETIQECAT EFIGFVTGEA SERCRRERRK TINGDDICHA MRSLGLDNYA DTMRRYLQRY  180
RESEELAMRS LGLDNYADTM RRYLQRYRES EELAAAINSS SGREIQIDVR DELSIFRGSE  240
QRQDKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-3694182492Transcription factor HapC (Eurofung)
4g92_B2e-3694182492Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972332.12e-69nuclear transcription factor Y subunit B-4
TrEMBLA0A2T7DBX63e-70A0A2T7DBX6_9POAL; Uncharacterized protein
STRINGPavir.Eb03825.1.p3e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.19e-44nuclear factor Y, subunit B4