PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00034.1.g03250.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 203aa MW: 21667.2 Da PI: 6.4864

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00034.1.g03250.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34	4.9e-11	72	98	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H+p Zjn_sc00034.1.g03250.1.sm.mkhc 72 PGEPDCTYYLRTGLCRFGMSCRFNHPP 98 5789*********************97 PP
2	zf-CCCH	43.5	5.4e-14	136	161	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++elC+f++r+G+Ck+G++CkF H++ Zjn_sc00034.1.g03250.1.sm.mkhc 136 GEELCKFYSRYGICKFGANCKFDHPM 161 689*********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.971	71	99	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.0E-5	71	98	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-8	73	98	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.05E-5	76	99	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	77	97	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.084	134	162	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-7	134	161	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-11	136	161	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-6	138	162	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.0E-6	138	159	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MENAGRTSAP AAVTVSASAS VAPAPPPPSA TTTTAADTSS SDPSALYEEA MWQQMAMDSG 60 TTMQPGPYPE RPGEPDCTYY LRTGLCRFGM SCRFNHPPDR NLAIASARMK GEYPERVGQP 120 ECQFKNRVTN SLGQEGEELC KFYSRYGICK FGANCKFDHP MATTPMGVYA YGFNASTSPA 180 SASTNVPTVQ RLLGSPSPSG YTS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT037035	8e-92	BT037035.1 Zea mays full-length cDNA clone ZM_BFb0152E14 mRNA, complete cds.
GenBank	EU965399	8e-92	EU965399.1 Zea mays clone 285780 zinc finger CCCH type domain-containing protein ZFN-like 2 mRNA, complete cds.
GenBank	JX428467	8e-92	JX428467.1 Zea mays subsp. mays clone pUT3062 C3H49 C3H type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971057.1	3e-72	zinc finger CCCH domain-containing protein 12
Swissprot	Q5JLB5	2e-56	C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBL	K3XI36	7e-71	K3XI36_SETIT; Uncharacterized protein
STRING	Si001558m	1e-71	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17256	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	8e-41	zinc finger protein 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Deng H,Liu H,Li X,Xiao J,Wang S A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease. Plant Physiol., 2012. 158(2): p. 876-89 [PMID:22158700]