PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00034.1.g05530.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 542aa    MW: 59520.7 Da    PI: 11.3981
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00034.1.g05530.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-17468515148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Zjn_sc00034.1.g05530.1.am.mk 468 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 515
                                   79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-23459518IPR009057Homeodomain-like
PROSITE profilePS5129423.433463519IPR017930Myb domain
SMARTSM007174.1E-14467517IPR001005SANT/Myb domain
PfamPF002492.9E-15468515IPR001005SANT/Myb domain
SuperFamilySSF466892.91E-21469542IPR009057Homeodomain-like
CDDcd001673.00E-11470515No hitNo description
Gene3DG3DSA:1.10.10.605.5E-8519542IPR009057Homeodomain-like
PROSITE profilePS512949.353520542IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MDPGSKWHAR HRAISTHATF DLARSSCAVI LSTPVPRATQ SLGLTLSGGR QALIKASYVD  60
LVPHRRPLLN DAKTKDGDAP KGRGTSVAGA LVRIADNAET PNGATTWDSS LDPIVVRVHP  120
RRRRTRHTAP TRATTTLDGK LEATRPTTAI GIPRRTTPGA RRARGWYAGR RRRSTVGSRG  180
GRAGTSAPRP LPCQEARAGG GRPPASSVTG LPQLHIRGHE CLTPYRPGRR WRRDSMYLPM  240
RDGARGMERS PDLPIATPRE DFVAQAIAFT EEQSCRRQLP VSANLLHLTL DSAHCFPSLS  300
SVACHYEQPF WRDPRGKRRR MVTRPKTARQ LSRTGPESPD IGVLVRGVGS LSARSIERTV  360
DVASHQAQSN PSSSQRKGQP CMFTLTREAA FIVDNPLAYE PSVTPALPGL GKYTEESRSS  420
RARARSNALP APASRQSVLG RSSEESLRRC AGEAMGRSPC CEKAHTNKGA WTKEEDQRLI  480
AYIKAHGEGC WRSLPKAAGL LRCGKSCRLR WMNYLRPDLK RGNFTEDDDE LIIKLHAMLG  540
NK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-14468542780B-MYB
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-113HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-55myb domain protein 4