PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00034.1.g06090.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 180aa    MW: 20092.2 Da    PI: 6.9702
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00034.1.g06090.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.3e-081552338
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlk 38
                                  +W++eEd+ +  a  +++ +   +W+ Ia+ ++ gRt+ 
  Zjn_sc00034.1.g06090.1.am.mk 15 PWSKEEDKVFESALVLWPDHtpdRWAMIAAQLP-GRTPT 52
                                  8*****************99*************.***86 PP
2Myb_DNA-binding45.32e-14113157347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +W++eE+ l++++ +++G g+W+ I+r    +Rt+ q+ s+ qky
  Zjn_sc00034.1.g06090.1.am.mk 113 PWSEEEHRLFLQGLEKYGRGDWRNISRFAVRTRTPTQVASHAQKY 157
                                   7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.598866IPR017930Myb domain
SuperFamilySSF466891.31E-111261IPR009057Homeodomain-like
SMARTSM007178.2E-51264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-61359IPR009057Homeodomain-like
CDDcd001678.20E-61553No hitNo description
PfamPF002496.2E-61552IPR001005SANT/Myb domain
PROSITE profilePS5129418.414106162IPR017930Myb domain
SuperFamilySSF466892.62E-17107161IPR009057Homeodomain-like
SMARTSM007173.0E-11110160IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.0E-17110161IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.7E-12113162IPR009057Homeodomain-like
CDDcd001671.64E-11113158No hitNo description
PfamPF002492.4E-12113157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEFHHHAGAA ATGRPWSKEE DKVFESALVL WPDHTPDRWA MIAAQLPGRT PTEAWEHYEA  60
LVADVDLIER GAVDVPGCWD AADDGGGGSE ESGPGRRAGS GRARGESRRP GIPWSEEEHR  120
LFLQGLEKYG RGDWRNISRF AVRTRTPTQV ASHAQKYFNR QLNPGSRDSK RKSIHDITTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-17777272RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794361e-141HF679436.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB30 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456680.11e-98transcription factor DIVARICATA
SwissprotQ8S9H73e-50DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLC5XQK53e-97C5XQK5_SORBI; Uncharacterized protein
STRINGSb03g040730.14e-98(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-47Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]