PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00036.1.g01010.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 233aa    MW: 25385.8 Da    PI: 8.8657
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00036.1.g01010.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-1883136356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k+ +++keq + Lee F+ n++++ +++e LA kl+L  rqV vWFqNrRa+ k
  Zjn_sc00036.1.g01010.1.am.mk  83 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTK 136
                                   67789***********************************************98 PP
2HD-ZIP_I/II1216.3e-3983170289
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                   kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++
  Zjn_sc00036.1.g01010.1.am.mk  83 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQR 163
                                   9******************************************************************************** PP

                   HD-ZIP_I/II  83 eveeLre 89 
                                   eveeLr+
  Zjn_sc00036.1.g01010.1.am.mk 164 EVEELRA 170
                                   *****94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-1862136IPR009057Homeodomain-like
SuperFamilySSF466895.01E-1973139IPR009057Homeodomain-like
PROSITE profilePS5007116.90878138IPR001356Homeobox domain
SMARTSM003899.7E-1680142IPR001356Homeobox domain
CDDcd000868.17E-1581139No hitNo description
PfamPF000469.4E-1683136IPR001356Homeobox domain
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PfamPF021833.3E-10138171IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.1E-23138181IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGATSPSASG LELTMAVPGL SSSSGSEGLA GCNNGNGNGN TNVRVDLDMN QPASGGEEEE  60
FPMGSVEEDE EERACGGGPH RPKKLRLSKE QSRLLEESFR LNHTLTPKQK EALAVKLKLR  120
PRQVEVWFQN RRARTKLKQT EMECEYLKRC FGSLTEENRR LQREVEELRA MRVAPPTVLS  180
PHTRQPLPAS ALTMCPRCER ITAATGPAAA RTGALAPPAA ASPFHPRRPS AAF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0626880.0BT062688.2 Zea mays full-length cDNA clone ZM_BFb0333H18 mRNA, complete cds.
GenBankEU9661900.0EU966190.1 Zea mays clone 292384 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819203.11e-127homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX11e-125HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-125HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2T7DJ801e-131A0A2T7DJ80_9POAL; Uncharacterized protein
STRINGORUFI01G27220.11e-123(Oryza rufipogon)
STRINGOS01T0643600-001e-123(Oryza sativa)
STRINGONIVA01G27550.11e-123(Oryza nivara)
STRINGSi002823m1e-123(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.16e-60homeobox-leucine zipper protein 17