PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00036.1.g01750.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 856aa    MW: 92072.3 Da    PI: 10.5127
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00036.1.g01750.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.15.5e-26676734259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  eH h+
  Zjn_sc00036.1.g01750.1.am.mk 676 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMAEHCHP 734
                                   799***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.18E-23674736IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-26675736IPR003657WRKY domain
SMARTSM007743.6E-31675735IPR003657WRKY domain
PROSITE profilePS5081129.126676736IPR003657WRKY domain
PfamPF031067.4E-22677734IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MVPESQRKRK WRDPKPGNSR LHVMHGSQRS KCTATCLRRA PPSEQREAFQ GLWTALAAAC  60
EYVWASRPYT VPSSPNNNLF DQNTYSLLAD HEQSELMRAI SFSPAVRARA SAIFPVINTC  120
SPLPQLVDSL FVSLYIRDRF ICLVPLDDEK TPTCARIPWA RENWLTESRT LACRAVRRRG  180
RKEASDSFRC HFPGISPRPR VQGRLATDKG QKPRRRGQAR PLGERRAASG EFDRARKGRI  240
SASCVAWGMC RGAEDARVGR AEPSASQALS PRPVHRPGRT SYVLPACFDP KSGSAVLSSS  300
ARVKGQPLSL PQRNSAAEPV ARSGGSIAPR PGVRASARAR SFIPHGRTDG RAGAPSAPLR  360
SPGVVVADKS AAVTRRFATY RRAGWSPPSP HPRDKPRGGR WRIYNAHAET CVSCSSVQIP  420
AQSFILPRPP GPPLEVDFLR VPSGPFCSIV RRASPDPAGL RLDQRQKSTP LPPSLAEHAS  480
SHPRSSCLKG WLGSSRRAFM RGPLLLVSME SFNDWDLQAV VRSCSFAHAE EPAGAPGAAA  540
APVRDVAAAQ ERRAPVVRAA APVPVPGRAS AAAGVVVKQE ASSSRMHGLE YLDLDHKPFL  600
LPPSATTAAA SRAGDDVREV MISFPAASTS GAQSRAVPPG RNKAGPRTPR PKRSKKSQLK  660
KVVREMPVAD GGVSASDPWA WRKYGQKPIK GSPYPRGYYK CSSMKGCMAR KLVERSPAKP  720
GVLIVTYMAE HCHPVPTQLN ALAGTTRHTK SASAATAAED RPAASSPKSH EQQGPVSDEA  780
ARCDAADSNE ASTAPVAAVE CGGTEEAAAA LADDDGEFLP AGMDLDELLA TVDDDFDFEP  840
VPDDDDGGAL GRRLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-17656737280Disease resistance protein RRS1
5w3x_D8e-17656737280Disease resistance protein RRS1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114161e-108AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706011e-108AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-33WRKY family protein