PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00036.1.g03400.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 293aa    MW: 32232.7 Da    PI: 8.6555
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00036.1.g03400.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.2e-13556147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                                    ++rWT+eE+  l+ +v+++G+g W+tI r          R+  ++k++w+++
  Zjn_sc00036.1.g03400.1.sm.mkhc  5 KQRWTAEEEAALKAGVARHGPGKWRTILRDPDfsallRLRSNVDLKDKWRNL 56
                                    79***********************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.089161IPR017930Myb domain
SuperFamilySSF466897.99E-15259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-13356IPR009057Homeodomain-like
SMARTSM007171.1E-6459IPR001005SANT/Myb domain
PfamPF002491.7E-8556IPR001005SANT/Myb domain
CDDcd116601.76E-18657No hitNo description
SuperFamilySSF467852.88E-6121163IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.5E-7122160IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.9E-6128160IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGVPKQRWTA EEEAALKAGV ARHGPGKWRT ILRDPDFSAL LRLRSNVDLK DKWRNLTVTA  60
GGYGSREKAR MALKKGRRVT KVTAEPMEVD KDNMDNVHDV VIDAQPLAVA VEPLQIEDSP  120
DKSVARLDDL ILEAIKNLKD ASGSTKAAIA AYIEVNQKYR IAPNSPSLVG KSTKLYSMEE  180
MNRENNVKQL TKTQVDSELE KMRGMTKEEA AAFAAKAVSE AEVAIAEAEE AARVAEAAEA  240
EAEAAKAFLE ARLWQAFTSA LDFSSCGVTG QGRTCQQQRI PRRRPATIEL RLV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818200.11e-116single myb histone 1
SwissprotB4FT401e-103SMH2_MAIZE; Single myb histone 2
TrEMBLA0A3L6SQP01e-120A0A3L6SQP0_PANMI; Single myb histone 1-like
STRINGPavir.Ea02064.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.38e-48telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]