PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00036.1.g04070.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 452aa MW: 49939.1 Da PI: 8.68

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00036.1.g04070.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	68.7	1.2e-21	82	146	2	64
HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE CS HSF_DNA-bind 2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkk 64 F+ k+ye++ d++++ ++sw gn+fvv+d++e+a +Lp++Fkh nfaSFvRQLn+Y +k Zjn_sc00036.1.g04070.1.am.mk 82 FVAKTYEMVADPATDAVVSWApgGAGNAFVVWDPRELAAALLPRFFKHANFASFVRQLNIYVSQK 146 9******************55556*********************************7655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	6.26E-20	78	155	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.7E-26	78	155	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	7.2E-23	79	149	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.1E-18	82	149	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-13	82	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-13	122	134	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-13	135	147	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MLKPRHLTEQ PRQHQHRHQQ TRSHSPHTAP RLEEPLGKEA ERAMAPPVVK REPKPEPWAA 60 EAAVSAGAGA PRPVDAAPPA PFVAKTYEMV ADPATDAVVS WAPGGAGNAF VVWDPRELAA 120 ALLPRFFKHA NFASFVRQLN IYVSQKHLLK NIKRRRPSKH YPDSQPRTGS SVCLGDDIRE 180 VQSLKRDRAS LMAELAMLKQ RYSRCKSLLA AMEDRVRDNE RKQQLIVAFF AKVLTNPAFL 240 QQLLNRLRNM ELCGGAAKRQ RLMASEEQQQ HQQHVGAPVV ENGVVEAAVA SAITEADVSE 300 TGSSSDGGVA AVKHETVPEW NGVQSFDNIC DDVWEELGAI PGTEVEQEVI AAASFDVEEF 360 AGKPCGWVDD CPYLVDPMPR AVTEFETGLK LIRRPTRPNS LWIWIPNRHC ILAHILLIAA 420 SGLRPPPPPR LDGFFSPPRR AIAAAGVLLR RG

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MLKPRHLTEQ PRQHQHRHQQ TRSHSPHTAP RLEEPLGKEA ERAMAPPVVK REPKPEPWAA  60
EAAVSAGAGA PRPVDAAPPA PFVAKTYEMV ADPATDAVVS WAPGGAGNAF VVWDPRELAA  120
ALLPRFFKHA NFASFVRQLN IYVSQKHLLK NIKRRRPSKH YPDSQPRTGS SVCLGDDIRE  180
VQSLKRDRAS LMAELAMLKQ RYSRCKSLLA AMEDRVRDNE RKQQLIVAFF AKVLTNPAFL  240
QQLLNRLRNM ELCGGAAKRQ RLMASEEQQQ HQQHVGAPVV ENGVVEAAVA SAITEADVSE  300
TGSSSDGGVA AVKHETVPEW NGVQSFDNIC DDVWEELGAI PGTEVEQEVI AAASFDVEEF  360
AGKPCGWVDD CPYLVDPMPR AVTEFETGLK LIRRPTRPNS LWIWIPNRHC ILAHILLIAA  420
SGLRPPPPPR LDGFFSPPRR AIAAAGVLLR RG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-15	64	146	16	91	Heat shock factor protein 1
5d5v_B	1e-15	64	146	16	91	Heat shock factor protein 1
5d5v_D	1e-15	64	146	16	91	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	154	LKNIKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968890	1e-58	EU968890.1 Zea mays clone 324753 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814071.1	1e-125	heat stress transcription factor A-6a-like
Swissprot	Q657C0	1e-111	HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBL	A0A2S3HUJ8	1e-123	A0A2S3HUJ8_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DKP3	1e-123	A0A2T7DKP3_9POAL; Uncharacterized protein
STRING	Pavir.Eb02487.1.p	1e-121	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	3e-42	heat shock transcription factor A2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]