PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00037.1.g00420.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 238aa MW: 26604.8 Da PI: 6.1731

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00037.1.g00420.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.6	8.8e-15	12	59	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ien++ r+ tf kRr+g+ K A LS+L++a+ a+++ s++gk+ + Zjn_sc00037.1.g00420.1.am.mk 12 FIENDRDRSLTFFKRRAGLYKAAADLSTLTGARLAIVLESESGKFSSF 59 8*******************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.4E-10	1	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.512	3	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-8	5	25	IPR002100	Transcription factor, MADS-box
CDD	cd00120	4.79E-16	6	62	No hit	No description
SuperFamily	SSF55455	5.36E-15	7	72	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.0E-17	12	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-8	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-8	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MARRARRSGV SFIENDRDRS LTFFKRRAGL YKAAADLSTL TGARLAIVLE SESGKFSSFG 60 APATDPIVDA FLLGEDPMVY AYASEKQRAT IVELQNEGLR LEKDLVLEDQ RRKEFIGMVK 120 ELQESSRVAK FIYDKVEDLD VDELHEMYRE LSHVHQETQL LLRTTHQDAT VKGPTMDSYT 180 TTHPASSKVG SPNTNMVTIL HRVPDDAPTR TTSTKIGSFF HGATASTEEA SINTSYPQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001167759.1	3e-60	uncharacterized protein LOC100381450
Refseq	XP_004971997.1	1e-60	transcription factor RLM1
TrEMBL	A0A1E5WGP1	2e-61	A0A1E5WGP1_9POAL; Uncharacterized protein
STRING	GRMZM2G375707_P01	1e-59	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3089	22	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	2e-14	M-type_MADS family protein