PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00037.1.g02130.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family DBB
Protein Properties Length: 311aa    MW: 33986.3 Da    PI: 5.0568
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00037.1.g02130.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.4e-075193541
                        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                     C+ +e   ++  C  ++  lC+ C +e+H        H++ p
  Zjn_sc00037.1.g02130.1.sm.mkhc 51 QCDACEGAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 93
                                    7******99*********************6678888888877 PP
2zf-B_box27.47.2e-09101132334
                        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeH 34 
                                      ++C+ ++ek + +fC +++ l+C+dC + +H
  Zjn_sc00037.1.g02130.1.sm.mkhc 101 LPRCDVCQEKAAFIFCVEDRALFCQDCDEPIH 132
                                     689**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.7E-124794IPR000315B-box-type zinc finger
PROSITE profilePS501199.7984794IPR000315B-box-type zinc finger
CDDcd000211.07E-65094No hitNo description
PfamPF006431.6E-55194IPR000315B-box-type zinc finger
SMARTSM003362.0E-1399146IPR000315B-box-type zinc finger
PROSITE profilePS501198.81699146IPR000315B-box-type zinc finger
PfamPF006437.8E-7101142IPR000315B-box-type zinc finger
CDDcd000212.65E-7102132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSPSRRADLF PLPPFVFFFH VRFHRSSLIF SCSIQWFLSP QRAKLEGMKI QCDACEGAAA  60
TVVCCADEAA LCARCDVEIH AANKLASKHQ RLPLEALSAR LPRCDVCQEK AAFIFCVEDR  120
ALFCQDCDEP IHVPGTLSGN HQRYLATGIR VGFGSASGCS GADSGGAHDA DHHAPQKAAA  180
EQAPSSRTTT NTTASAEAQQ VPSPPQFLPQ GWAVDELLQF SDYETGDKMQ KESPLGFKEL  240
DWFADVDLFQ DQAPKAGRMA AMVPEMFGSQ AVNDVAYYRP SKATADVHQS KKARIEVLDD  300
EDDYLLVPDL G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953029.11e-150B-box zinc finger protein 25
TrEMBLA0A368PNF31e-149A0A368PNF3_SETIT; Uncharacterized protein
STRINGSb04g025400.11e-142(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.18e-68DBB family protein