PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00037.1.g03460.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 414aa MW: 45648.2 Da PI: 10.145

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00037.1.g03460.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.7	1.8e-30	86	136	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQ Zjn_sc00037.1.g03460.1.am.mk 86 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 136 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.723	83	143	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-29	83	137	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.53E-14	85	137	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-21	86	137	IPR006447	Myb domain, plants
Pfam	PF00249	4.5E-7	88	137	IPR001005	SANT/Myb domain
Pfam	PF14379	5.4E-12	130	161	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MGGFERTPPR KATVRPLFSA AREPYSLFLN LSIDPNNPTK HQCTRGEKRM FPSKKATSSA 60 AAAVSSNDRP MCVQGDSGLV LTTDPKPRLR WTVELHERFV DAVTQLGGPD KATPKTIMRV 120 MGVKGLTLYH LKSHLQVQKH LQMRIEAQGK YMQSILEKAY QSLASDDVMS FSAGYKSLGN 180 QAVPDVCSLE DISPSMGFPS LQDLHMYGGG HLDLQQQQME RPMESFFACS DSSIGSLGKK 240 RPNLYAASKS PMMWGDDEQG KIISDHLQMA PPMIDGGIDV MDSIAGVYGE VKPMMSGDST 300 GSKGFDGKLE RPSPQRRMDS PSVIGGQNLS YGSCVSLSSD RRSSYYRTHR RARLPRKIIL 360 ERIKATLDAP YRILHCRWVP RARDSKPLEL GSKAARSSAA QQRRGSQIKS PAGP

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MGGFERTPPR KATVRPLFSA AREPYSLFLN LSIDPNNPTK HQCTRGEKRM FPSKKATSSA  60
AAAVSSNDRP MCVQGDSGLV LTTDPKPRLR WTVELHERFV DAVTQLGGPD KATPKTIMRV  120
MGVKGLTLYH LKSHLQVQKH LQMRIEAQGK YMQSILEKAY QSLASDDVMS FSAGYKSLGN  180
QAVPDVCSLE DISPSMGFPS LQDLHMYGGG HLDLQQQQME RPMESFFACS DSSIGSLGKK  240
RPNLYAASKS PMMWGDDEQG KIISDHLQMA PPMIDGGIDV MDSIAGVYGE VKPMMSGDST  300
GSKGFDGKLE RPSPQRRMDS PSVIGGQNLS YGSCVSLSSD RRSSYYRTHR RARLPRKIIL  360
ERIKATLDAP YRILHCRWVP RARDSKPLEL GSKAARSSAA QQRRGSQIKS PAGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-16	86	136	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	86	136	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	86	136	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	86	136	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951955	5e-70	JF951955.1 Aegilops tauschii clone TaMYB72 MYB-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799290.1	1e-138	myb family transcription factor APL
Swissprot	Q9SAK5	3e-54	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A1E5VH39	1e-148	A0A1E5VH39_9POAL; Myb family transcription factor APL
STRING	Pavir.Aa03369.1.p	1e-126	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2504	38	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	7e-55	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]