PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00037.1.g04870.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 173aa MW: 18804.4 Da PI: 10.2773

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00037.1.g04870.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	24.2	6.8e-08	33	58	2	27
RWP-RK 2 ekeisledlskyFslpikdAAkeLgv 27 ek++sle+l++yFs+ +kdAA++Lgv Zjn_sc00037.1.g04870.1.am.mk 33 EKTVSLEELQRYFSGRMKDAARSLGV 58 799**********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54277	4.12E-7	135	172	No hit	No description
Gene3D	G3DSA:3.10.20.240	7.8E-6	137	173	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MDNGEPKEGE DPEPQVSRRK RRRRKKLAKR ENEKTVSLEE LQRYFSGRMK DAARSLGVPY 60 SQQSMAAPAA SHQAPAPAPA TVHDPPAALL PYLSSAVEVT SSQGSCQEPP PPPPPLPPRM 120 STAIRKKPFH AGDTELVTVK ASYRGDIVRF RVPSSAGVEA VMGEVAKRLG LET

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	25	RRKRRRRKK
2	18	22	RKRRR
3	18	25	RKRRRRKK
4	19	24	KRRRRK
5	19	25	KRRRRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002453272.1	1e-38	protein NLP3
TrEMBL	A0A3L6RS29	5e-38	A0A3L6RS29_PANMI; Uncharacterized protein
STRING	Sb04g002940.1	6e-38	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6269	29	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	3e-07	NIN like protein 7