PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00038.1.g00820.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 207aa    MW: 23350.3 Da    PI: 4.6133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00038.1.g00820.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.6e-111321711054
                                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   ++RR+riN+++  L+el+P+      +K++ +++Le+AveY+k L
  Zjn_sc00038.1.g00820.1.am.mk 132 QKRRQRINERLRILQELIPNG-----TKVDISTMLEEAVEYVKFL 171
                                   89*****************97.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-13121186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.348122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11128181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-9128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.32E-10132176No hitNo description
PfamPF000104.2E-8132171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDISQKVQSS ATDMEIECAT ICEESEMIAH LQSVFWGSSD LDVDPNFPSS NISSLIDNES  60
FCSGLVLNIT QNVAFERKHD NFSSENEATL GSKRKIQTDE LMISGEEDCA VPAAMRARKK  120
SEKDSQSRYA KQKRRQRINE RLRILQELIP NGTKVDISTM LEEAVEYVKF LHLQIKLLSS  180
DELWMYAPLA YRGIDIGGHL DALSAQE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809609.19e-59transcription factor bHLH84-like
TrEMBLA0A2S3HE592e-57A0A2S3HE59_9POAL; Uncharacterized protein
TrEMBLA0A2T7EHD82e-57A0A2T7EHD8_9POAL; Uncharacterized protein
STRINGORGLA12G0196200.15e-57(Oryza glaberrima)
STRINGOBART12G13380.15e-57(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145082123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.12e-40root hair defective 6-like 4