PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00038.1.g03470.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 181aa MW: 20173.5 Da PI: 10.1368

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00038.1.g03470.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.1	1e-10	115	175	41	99
TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE-S CS B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfrk 99 + +W v++ y +++ r + + W +Fv++ngL+ D++vF+l+ g +++++vv+v+rk Zjn_sc00038.1.g03470.1.sm.mk 115 NNRLKWHVRY-YHGSGTRGFGCRRWVKFVRDNGLRRDDVCVFELVkkGGaRRTTMVVHVVRK 175 45589***.6666666666679*****************8754555777888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.94E-13	95	175	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.01E-10	100	174	No hit	No description
Pfam	PF02362	2.3E-8	114	175	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.0E-9	117	175	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.587	119	176	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MGGQRAEHCG LSDSDDDAGT PLRLVESARK ASASKKKSTA GRTNPGGEST ESPDSSHEEE 60 QSDDRRAGSN CCYYSRSASV LTEDEREEAL SLVSIRPGNP AFVTVLQKSH MNRKNNRLKW 120 HVRYYHGSGT RGFGCRRWVK FVRDNGLRRD DVCVFELVKK GGARRTTMVV HVVRKRNGSV 180 M

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808341.1	8e-57	B3 domain-containing protein Os12g0592300-like
Swissprot	Q2QMT2	2e-42	Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBL	A0A0A9E2X8	5e-59	A0A0A9E2X8_ARUDO; Uncharacterized protein
STRING	Pavir.Cb00316.1.p	1e-54	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP562	34	179