PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00039.1.g00340.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 876aa MW: 93972.4 Da PI: 9.8438

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00039.1.g00340.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.7	7.5e-07	686	714	3	31
HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 3 rahnerErrRRdriNsafeeLrellPkas 31 +h+ +Er RR++i +++ L++l+P++s Zjn_sc00039.1.g00340.1.am.mk 686 NSHSLAERLRREKISERMKLLQDLVPSCS 714 58*************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51375	8.802	276	311	IPR002885	Pentatricopeptide repeat
Pfam	PF13041	1.0E-7	278	323	IPR002885	Pentatricopeptide repeat
TIGRFAMs	TIGR00756	5.6E-7	278	312	IPR002885	Pentatricopeptide repeat
SuperFamily	SSF47459	4.06E-7	681	716	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.24E-4	681	715	No hit	No description
PROSITE profile	PS50888	10.144	683	738	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-7	686	717	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence Send to blast
MLSFEQPRLI SREDEVDIGI IEHEVGLTQR HHTPPEAEVS LEKASQLIIL LEQAAATTWG 60 GGGGGNPAPE AMDESGLGPS EGRGGRGWGR GGKRRAARAA GGGEGRPAQA AGSEEGRSAR 120 AVAREGVGAW RRAAGGGEGQ LAQAASRGEG RAALTAREGR GEQRGPPCEG DGEPYAGRGP 180 WAAEEVGAPC SPELGRTGAR TQQPSPSRCR RDAAVRLSTP PQSTLDINPR RASPNYPFLN 240 STTLGAANEP RPQPPPCDAQ PRPPPPPSLR CRTRRACVSW NTVLSCCVTN GEYNEAIVVF 300 REMLVSWEYE PDRVTLVSVI SAIAHLGALA QGLWAYAFRK GIEVEESSAL INITGECTAP 360 RPASAAAQDR KKKESAEPLL SYGLLLFIRN KKDEERKRQL SCAVVESKVK QEVLSSACCR 420 TVRLLRCCVT VASSMDMNNE RNEKGMESNR ASSGAAGIPV EWQNQFSAAF PCPPAQQQAS 480 MMDSFASAGL WASTSQAMGL SDAMSPGRES GFLATVPGFL PQGLGHFPVD SGFIERAARA 540 SCFGGSGGGV MAANAGFGAA DQPMNNAFSG SSEALLDHQR KDGNGKAETD LGRNGHGEVR 600 SSEAAGGDCS SKGTSESKKR RRPNEVQSSN LPADSANESV HSKDKGEESS PATTTGKSKG 660 KGAKETSESQ KEEYIHVRAR RGQATNSHSL AERLRREKIS ERMKLLQDLV PSCSKMAHAM 720 NGSFSDVTQM AYPSLGSQNL SMRPSQNGRR RITDAASAGW AAPQCELIAP FNCVMHARRS 780 RTKARQRRAM MMKPRHPVRG RTRHAPAIPP VCVQPARPDR GGCELRRPRR QIGQRSERIY 840 FVAYSDRAAG VIRRYVSFLG FTRRSLWVSG WRSSGS

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence Send to blast

MLSFEQPRLI SREDEVDIGI IEHEVGLTQR HHTPPEAEVS LEKASQLIIL LEQAAATTWG  60
GGGGGNPAPE AMDESGLGPS EGRGGRGWGR GGKRRAARAA GGGEGRPAQA AGSEEGRSAR  120
AVAREGVGAW RRAAGGGEGQ LAQAASRGEG RAALTAREGR GEQRGPPCEG DGEPYAGRGP  180
WAAEEVGAPC SPELGRTGAR TQQPSPSRCR RDAAVRLSTP PQSTLDINPR RASPNYPFLN  240
STTLGAANEP RPQPPPCDAQ PRPPPPPSLR CRTRRACVSW NTVLSCCVTN GEYNEAIVVF  300
REMLVSWEYE PDRVTLVSVI SAIAHLGALA QGLWAYAFRK GIEVEESSAL INITGECTAP  360
RPASAAAQDR KKKESAEPLL SYGLLLFIRN KKDEERKRQL SCAVVESKVK QEVLSSACCR  420
TVRLLRCCVT VASSMDMNNE RNEKGMESNR ASSGAAGIPV EWQNQFSAAF PCPPAQQQAS  480
MMDSFASAGL WASTSQAMGL SDAMSPGRES GFLATVPGFL PQGLGHFPVD SGFIERAARA  540
SCFGGSGGGV MAANAGFGAA DQPMNNAFSG SSEALLDHQR KDGNGKAETD LGRNGHGEVR  600
SSEAAGGDCS SKGTSESKKR RRPNEVQSSN LPADSANESV HSKDKGEESS PATTTGKSKG  660
KGAKETSESQ KEEYIHVRAR RGQATNSHSL AERLRREKIS ERMKLLQDLV PSCSKMAHAM  720
NGSFSDVTQM AYPSLGSQNL SMRPSQNGRR RITDAASAGW AAPQCELIAP FNCVMHARRS  780
RTKARQRRAM MMKPRHPVRG RTRHAPAIPP VCVQPARPDR GGCELRRPRR QIGQRSERIY  840
FVAYSDRAAG VIRRYVSFLG FTRRSLWVSG WRSSGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	90	RGGRGWGRG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121418	2e-83	AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
GenBank	HQ858863	2e-83	HQ858863.1 Oryza sativa Japonica Group isolate UT1672 bHLH- transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B9G448	1e-144	B9G448_ORYSJ; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	9e-27	bHLH family protein